@inproceedings{Agarwal1998,
  author = {Pankaj Agarwal, Vineet Bafna},
  title = {Detecting non-adjoining correlations with signals in DNA},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 2–8. Association for Computing Machinery, New York, NY, USA.},
  pages = {2--8},
  year = {1998},
  doi = {10.1145/279069.279076},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 2–8. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {2--8},
  proceedings_doi = {10.1145/279069.279076}
}

@article{Ben‐Dor1998,
  author = {Amir Ben‐Dor, Benny Chor, Dan Graur, Ron Ophir, Dan Pelleg},
  title = {Constructing Phylogenies from Quartets: Elucidation of Eutherian Superordinal Relationships},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {377--390},
  year = {1998},
  doi = {10.1089/cmb.1998.5.377},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 9–19. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {9--19},
  proceedings_doi = {10.1145/279069.279078}
}

@inproceedings{Benson1998,
  author = {Gary Benson},
  title = {An algorithm for finding tandem repeats of unspecified pattern size},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 20–29. Association for Computing Machinery, New York, NY, USA.},
  pages = {20--29},
  year = {1998},
  doi = {10.1145/279069.279079},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 20–29. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {20--29},
  proceedings_doi = {10.1145/279069.279079}
}

@article{Berger1998,
  author = {Bonnie Berger, Tom Leighton},
  title = {Protein Folding in the Hydrophobic-Hydrophilic (HP) Model is NP-Complete},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {1},
  pages = {27--40},
  year = {1998},
  doi = {10.1089/cmb.1998.5.27},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 30–39. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {30--39},
  proceedings_doi = {10.1145/279069.279080}
}

@article{Bonet1998,
  author = {Maria Bonet, Mike Steel, Tandy Warnow, Shibu Yooseph},
  title = {Better Methods for Solving Parsimony and Compatibility},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {391--407},
  year = {1998},
  doi = {10.1089/cmb.1998.5.391},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 40–49. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {40--49},
  proceedings_doi = {10.1145/279069.279081}
}

@article{Chen1998,
  author = {Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman},
  title = {Hierarchical Organization of Molecular Structure Computations},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {409--422},
  year = {1998},
  doi = {10.1089/cmb.1998.5.409},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 51–59. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {51--59},
  proceedings_doi = {10.1145/279069.279086}
}

@article{Crescenzi1998,
  author = {Pierluigi Crescenzi, Deborah Goldman, Christos Papadimitriou, Antonio Piccolboni, Mihalis Yannakakis},
  title = {On the Complexity of Protein Folding},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {423--465},
  year = {1998},
  doi = {10.1089/cmb.1998.5.423},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 61–62. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {61--62},
  proceedings_doi = {10.1145/279069.279089}
}

@inproceedings{Fasulo1998,
  author = {Dan Fasulo, Tao Jiang, Richard M. Karp, Nitin Sharma},
  title = {Constructing maps using the span and inclusion relations},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 64–73. Association for Computing Machinery, New York, NY, USA.},
  pages = {64--73},
  year = {1998},
  doi = {10.1145/279069.279090},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 64–73. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {64--73},
  proceedings_doi = {10.1145/279069.279090}
}

@inproceedings{Finkelstein1998,
  author = {Alexei V. Finkelstein, Azat Ya. Badretdinov},
  title = {How fast a protein chain can fold to its most stable structure?},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 74–78. Association for Computing Machinery, New York, NY, USA.},
  pages = {74--78},
  year = {1998},
  doi = {10.1145/279069.279091},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 74–78. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {74--78},
  proceedings_doi = {10.1145/279069.279091}
}

@article{Fye1999,
  author = {Richard M. Fye, Craig J. Benhan},
  title = {Exact method for numerically analyzing a model of local denaturation in superhelically stressed DNA},
  journal = {Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics},
  volume = {59},
  number = {3},
  pages = {3408--3426},
  year = {1999},
  doi = {10.1103/physreve.59.3408},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 79–84. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {79--84},
  proceedings_doi = {10.1145/279069.279093}
}

@article{Gelfand1998,
  author = {I. Gelfand, Alexander Kister, Casimir A. Kulikowski, Ognyan Stoyanov},
  title = {Algorithmic Determination of Core Positions in the VL and VH Domains of Immunoglobulin Molecules},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {467--477},
  year = {1998},
  doi = {10.1089/cmb.1998.5.467},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 85–93. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {85--93},
  proceedings_doi = {10.1145/279069.279095}
}

@article{Grundy1998,
  author = {William Noble Grundy},
  title = {Homology Detection via Family Pairwise Search},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {479--491},
  year = {1998},
  doi = {10.1089/cmb.1998.5.479},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 94–100. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {94--100},
  proceedings_doi = {10.1145/279069.279098}
}

@article{Holmes1998,
  author = {Ian Holmes, Richard Durbin},
  title = {Dynamic Programming Alignment Accuracy},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {493--504},
  year = {1998},
  doi = {10.1089/cmb.1998.5.493},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 102–108. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {102--108},
  proceedings_doi = {10.1145/279069.279102}
}

@inproceedings{Hwa1998,
  author = {Terence Hwa, Michael Lässig},
  title = {Optimal detection of sequence similarity by local alignment},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 109–116. Association for Computing Machinery, New York, NY, USA.},
  pages = {109--116},
  year = {1998},
  doi = {10.1145/279069.279103},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 109–116. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {109--116},
  proceedings_doi = {10.1145/279069.279103},
  preprint_id = {arXiv:cond-mat/9712081},
  preprint_doi = {10.48550/arXiv.cond-mat/9712081}
}

@article{Karp2000,
  author = {Richard M. Karp, Ron Shamir},
  title = {Algorithms for Optical Mapping},
  journal = {Journal of Computational Biology},
  volume = {7},
  number = {1-2},
  pages = {303--316},
  year = {2000},
  doi = {10.1089/10665270050081540},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 117–124. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {117--124},
  proceedings_doi = {10.1145/279069.279104}
}

@inproceedings{Kearney1998,
  author = {Paul E. Kearney},
  title = {The ordinal quartet method},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 125–134. Association for Computing Machinery, New York, NY, USA.},
  pages = {125--134},
  year = {1998},
  doi = {10.1145/279069.279105},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 125–134. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {125--134},
  proceedings_doi = {10.1145/279069.279105}
}

@inproceedings{Koonin1998,
  author = {Eugene V. Koonin, Roman L. Tatusov, Michael Y. Galperin, Michael N. Rosanov},
  title = {Genome analysis using clusters of orthologous groups (COGs)},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 135–139. Association for Computing Machinery, New York, NY, USA.},
  pages = {135--139},
  year = {1998},
  doi = {10.1145/279069.279106},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 135–139. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {135--139},
  proceedings_doi = {10.1145/279069.279106}
}

@inproceedings{Koshi1998,
  author = {Jeffrey M. Koshi, David P. Mindell, Richard A. Goldstein},
  title = {Beyond mutation matrices: physical-chemistry based evolutionary models},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 140–145. Association for Computing Machinery, New York, NY, USA.},
  pages = {140--145},
  year = {1998},
  doi = {10.1145/279069.279107},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 140–145. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {140--145},
  proceedings_doi = {10.1145/279069.279107}
}

@article{Lee1998,
  author = {Jae K Lee, Vlado Dančík, Michael S. Waterman},
  title = {Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {505--515},
  year = {1998},
  doi = {10.1089/cmb.1998.5.505},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 147–152. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {147--152},
  proceedings_doi = {10.1145/279069.279108}
}

@article{Lenhof1998,
  author = {Hans‐Peter Lenhof, Knut Reinert, Martin Vingron},
  title = {A Polyhedral Approach to RNA Sequence Structure Alignment},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {153--162},
  year = {1998},
  doi = {10.1089/cmb.1998.5.517},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 153–162. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {153--162},
  proceedings_doi = {10.1145/279069.279109}
}

@inproceedings{Lesk1998,
  author = {Arthur M. Lesk},
  title = {Assessment of ab initio protein structure prediction},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 163–171. Association for Computing Machinery, New York, NY, USA.},
  pages = {163--171},
  year = {1998},
  doi = {10.1145/279069.279110},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 163–171. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {163--171},
  proceedings_doi = {10.1145/279069.279110}
}

@inproceedings{Liu1998,
  author = {Rongxiang Liu, Tom W. Blackwell, David U. States},
  title = {A structure based similarity measure for nucleic acid sequence comparison},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 173–181. Association for Computing Machinery, New York, NY, USA.},
  pages = {173--181},
  year = {1998},
  doi = {10.1145/279069.279112},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 173–181. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {173--181},
  proceedings_doi = {10.1145/279069.279112}
}

@inproceedings{Ma1998,
  author = {Bin Ma, Ming Li, Louxin Zhang},
  title = {On reconstructing species trees from gene trees in term of duplications and losses},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 182–191. Association for Computing Machinery, New York, NY, USA.},
  pages = {182--191},
  year = {1998},
  doi = {10.1145/279069.279113},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 182–191. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {182--191},
  proceedings_doi = {10.1145/279069.279113}
}

@article{Parida2000,
  author = {Laxmi Parida, Bud Mishra},
  title = {Partitioning single-molecule maps into multiple populations: algorithms and probabilistic analysis},
  journal = {Discrete Applied Mathematics},
  volume = {104},
  number = {1-3},
  pages = {203--227},
  year = {2000},
  doi = {10.1016/s0166-218x(00)00191-8},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 192–201. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {192--201},
  proceedings_doi = {10.1145/279069.279114}
}

@inproceedings{Politte1998,
  author = {David G. Politte, David R. Maffitt, David J. States},
  title = {Estimation of allele frequencies from color-multiplexed electropherograms},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 202–206. Association for Computing Machinery, New York, NY, USA.},
  pages = {202--206},
  year = {1998},
  doi = {10.1145/279069.279115},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 202–206. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {202--206},
  proceedings_doi = {10.1145/279069.279115}
}

@article{Régnier2000,
  author = {Mireille Régnier},
  title = {A unified approach to word occurrence probabilities},
  journal = {Discrete Applied Mathematics},
  volume = {104},
  number = {1-3},
  pages = {259--280},
  year = {2000},
  doi = {10.1016/s0166-218x(00)00195-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 207–213. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {207--213},
  proceedings_doi = {10.1145/279069.279116}
}

@inproceedings{Reva1998,
  author = {Boris A. Reva, Alexei V. Finkelstein, Jeffrey Skolnick},
  title = {A self-consistent field optimization approach to build energetically and geometrically correct lattice models of proteins},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 214–220. Association for Computing Machinery, New York, NY, USA.},
  pages = {214--220},
  year = {1998},
  doi = {10.1145/279069.279117},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 214–220. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {214--220},
  proceedings_doi = {10.1145/279069.279117}
}

@inproceedings{Rigoutsos1998,
  author = {Isidore Rigoutsos, Aris Floratos},
  title = {Motif discovery without alignment or enumeration},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 221–227. Association for Computing Machinery, New York, NY, USA.},
  pages = {221--227},
  year = {1998},
  doi = {10.1145/279069.279118},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 221–227. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {221--227},
  proceedings_doi = {10.1145/279069.279118}
}

@inproceedings{Rocke1998,
  author = {Emily Rocke, Martin Tompa},
  title = {An algorithm for finding novel gapped motifs in DNA sequences},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 228–233. Association for Computing Machinery, New York, NY, USA.},
  pages = {228--233},
  year = {1998},
  doi = {10.1145/279069.279119},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 228–233. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {228--233},
  proceedings_doi = {10.1145/279069.279119}
}

@article{Sagot1998,
  author = {Marie‐France Sagot, Eugene W. Myers},
  title = {Identifying Satellites and Periodic Repetitions in Biological Sequences},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {539--553},
  year = {1998},
  doi = {10.1089/cmb.1998.5.539},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 234–242. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {234--242},
  proceedings_doi = {10.1145/279069.279120}
}

@inproceedings{Sankoff1998,
  author = {David Sankoff, Mathieu Blanchette},
  title = {Multiple genome rearrangements},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 243–247. Association for Computing Machinery, New York, NY, USA.},
  pages = {243--247},
  year = {1998},
  doi = {10.1145/279069.279122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 243–247. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {243--247},
  proceedings_doi = {10.1145/279069.279122}
}

@article{Sun1999,
  author = {Fengzhu Sun},
  title = {Modeling DNA Shuffling},
  journal = {Journal of Computational Biology},
  volume = {6},
  number = {1},
  pages = {77--90},
  year = {1999},
  doi = {10.1089/cmb.1999.6.77},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 251–257. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {251--257},
  proceedings_doi = {10.1145/279069.279126}
}

@inproceedings{Sunyaev1998,
  author = {Shamil R. Sunyaev, Igor V. Rodchnkov, Frank Eisenhaber, Eugene N. Kuznetsov},
  title = {Analysis of the position dependent amino acid probabilities and its application to the search for remote homologues},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 258–265. Association for Computing Machinery, New York, NY, USA.},
  pages = {258--265},
  year = {1998},
  doi = {10.1145/279069.279127},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 258–265. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {258--265},
  proceedings_doi = {10.1145/279069.279127}
}

@inproceedings{Vologodskii1998,
  author = {Alexander Vologodskii},
  title = {Maxwell demon and topology simplification by type II topoisomerases},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 266–269. Association for Computing Machinery, New York, NY, USA.},
  pages = {266--269},
  year = {1998},
  doi = {10.1145/279069.279129},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 266–269. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {266--269},
  proceedings_doi = {10.1145/279069.279129}
}

@article{Walker1998,
  author = {Wynn L. Walker, Elliot M. Landaw, Richard E. Dickerson, David S. Goodsell},
  title = {The theoretical limits of DNA sequence discrimination by linked polyamides},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {95},
  number = {8},
  pages = {4315--4320},
  year = {1998},
  doi = {10.1073/pnas.95.8.4315},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 270–275. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {270--275},
  proceedings_doi = {10.1145/279069.279130}
}

@article{Wu1998,
  author = {Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, Douglas L. Brutlag},
  title = {Regression Analysis of Multiple Protein Structures},
  journal = {Journal of Computational Biology},
  volume = {5},
  number = {3},
  pages = {585--595},
  year = {1998},
  doi = {10.1089/cmb.1998.5.585},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 276–284. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {276--284},
  proceedings_doi = {10.1145/279069.279132}
}

@inproceedings{Xu1998,
  author = {Ying Xu, Dong Xu, Edward C. Uberbacher},
  title = {A new method for modeling and solving the protein fold recognition problem},
  booktitle = {Research in Computational Molecular Biology. RECOMB 1998, pp 285–292. Association for Computing Machinery, New York, NY, USA.},
  pages = {285--292},
  year = {1998},
  doi = {10.1145/279069.279134},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 1998, pp 285–292. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {285--292},
  proceedings_doi = {10.1145/279069.279134}
}