@article{Amato2003,
  author = {Nancy M. Amato, Ken A. Dill, Guang Song},
  title = {Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {239--255},
  year = {2003},
  doi = {10.1089/10665270360688002},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 2–11. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {2--11},
  proceedings_doi = {10.1145/565196.565198}
}

@article{Apaydın2003,
  author = {Mehmet Serkan Apaydın, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean‐Claude Latombe, Chris Varma},
  title = {Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {257--281},
  year = {2003},
  doi = {10.1089/10665270360688011},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 12–21. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {12--21},
  proceedings_doi = {10.1145/565196.565199}
}

@article{Apostolico2003,
  author = {Alberto Apostolico, Mary Ellen Bock, Stefano Lonardi},
  title = {Monotony of Surprise and Large-Scale Quest for Unusual Words},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {283--311},
  year = {2003},
  doi = {10.1089/10665270360688020},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 22–31. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {22--31},
  proceedings_doi = {10.1145/565196.565200}
}

@article{Arndt2003,
  author = {Peter F. Arndt, Christopher B. Burge, Terence Hwa},
  title = {DNA Sequence Evolution with Neighbor-Dependent Mutation},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {313--322},
  year = {2003},
  doi = {10.1089/10665270360688039},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 32–38. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {32--38},
  proceedings_doi = {10.1145/565196.565201}
}

@inproceedings{Bar-Joseph2002,
  author = {Ziv Bar-Joseph, Georg Gerber, David K. Gifford, Tommi S. Jaakkola, Itamar Simon},
  title = {A new approach to analyzing gene expression time series data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 39–48. Association for Computing Machinery, New York, NY, USA.},
  pages = {39--48},
  year = {2002},
  doi = {10.1145/565196.565202},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 39–48. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {39--48},
  proceedings_doi = {10.1145/565196.565202}
}

@article{Ben‐Dor2003,
  author = {Amir Ben‐Dor, Benny Chor, Richard M. Karp, Zohar Yakhini},
  title = {Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {373--384},
  year = {2003},
  doi = {10.1089/10665270360688075},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 49–57. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {49--57},
  proceedings_doi = {10.1145/565196.565203}
}

@article{Ben‐Dor2003,
  author = {Amir Ben‐Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir},
  title = {The Restriction Scaffold Problem},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {385--398},
  year = {2003},
  doi = {10.1089/10665270360688084},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 58–66. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {58--66},
  proceedings_doi = {10.1145/565196.565204}
}

@article{Bérard2003,
  author = {Sèverine Bérard, Éric Rivals},
  title = {Comparison of Minisatellites},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {357--372},
  year = {2003},
  doi = {10.1089/10665270360688066},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 67–76. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {67--76},
  proceedings_doi = {10.1145/565196.565205}
}

@article{Bradley2002,
  author = {Philip Bradley, Peter S. Kim, Bonnie Berger},
  title = {trilogy : Discovery of sequence–structure patterns across diverse proteins},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {99},
  number = {13},
  pages = {8500--8505},
  year = {2002},
  doi = {10.1073/pnas.112221999},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 77–88. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {77--88},
  proceedings_doi = {10.1145/565196.565206}
}

@article{Buhler2003,
  author = {Jeremy Buhler},
  title = {Provably Sensitive Indexing Strategies for Biosequence Similarity Search},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {399--417},
  year = {2003},
  doi = {10.1089/10665270360688093},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 90–99. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {90--99},
  proceedings_doi = {10.1145/565196.565208}
}

@inproceedings{Caprara2002,
  author = {Alberto Caprara, Giuseppe Lancia},
  title = {Structural alignment of large-size proteins via lagrangian relaxation},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 100–108. Association for Computing Machinery, New York, NY, USA.},
  pages = {100--108},
  year = {2002},
  doi = {10.1145/565196.565209},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 100–108. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {100--108},
  proceedings_doi = {10.1145/565196.565209}
}

@inproceedings{Cohen2002,
  author = {Barry Cohen, Steven Skiena},
  title = {Designing RNA structures: natural and artificial selection},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 109–116. Association for Computing Machinery, New York, NY, USA.},
  pages = {109--116},
  year = {2002},
  doi = {10.1145/565196.565210},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 109–116. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {109--116},
  proceedings_doi = {10.1145/565196.565210}
}

@article{Deng2002,
  author = {Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen},
  title = {Inferring Domain–Domain Interactions From Protein–Protein Interactions},
  journal = {Genome Research},
  volume = {12},
  number = {10},
  pages = {1540--1548},
  year = {2002},
  doi = {10.1101/gr.153002},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 117–126. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {117--126},
  proceedings_doi = {10.1145/565196.565211}
}

@inproceedings{Ding2002,
  author = {Chris H. Q. Ding},
  title = {Analysis of gene expression profiles: class discovery and leaf ordering},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 127–136. Association for Computing Machinery, New York, NY, USA.},
  pages = {127--136},
  year = {2002},
  doi = {10.1145/565196.565212},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 127–136. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {127--136},
  proceedings_doi = {10.1145/565196.565212}
}

@inproceedings{Dror2002,
  author = {Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young},
  title = {A bayesian approach to transcript estimation from gene array data: the BEAM technique},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 137–143. Association for Computing Machinery, New York, NY, USA.},
  pages = {137--143},
  year = {2002},
  doi = {10.1145/565196.565213},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 137–143. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {137--143},
  proceedings_doi = {10.1145/565196.565213}
}

@article{Durand2003,
  author = {Dannie Durand, David Sankoff},
  title = {Tests for Gene Clustering},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {453--482},
  year = {2003},
  doi = {10.1089/10665270360688129},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 144–154. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {144--154},
  proceedings_doi = {10.1145/565196.565214}
}

@article{El-Mabrouk2005,
  author = {Nadia El-Mabrouk, Mathieu Raffinot, Jean-Eudes Duchesne, Mathieu Lajoie, Nicolas Luc},
  title = {Approximate Matching of Structured Motifs in DNA Sequences},
  journal = {Journal of Bioinformatics and Computational Biology},
  volume = {03},
  number = {02},
  pages = {317--342},
  year = {2005},
  doi = {10.1142/s0219720005001065},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 156–164. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {156--164},
  proceedings_doi = {10.1145/565196.565216}
}

@inproceedings{Gusfield2002,
  author = {Dan Gusfield},
  title = {Haplotyping as perfect phylogeny: conceptual framework and efficient solutions},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 166–175. Association for Computing Machinery, New York, NY, USA.},
  pages = {166--175},
  year = {2002},
  doi = {10.1145/565196.565218},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 166–175. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {166--175},
  proceedings_doi = {10.1145/565196.565218}
}

@article{Halperin2003,
  author = {Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir},
  title = {Handling Long Targets and Errors in Sequencing by Hybridization},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {483--497},
  year = {2003},
  doi = {10.1089/10665270360688138},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 176–185. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {176--185},
  proceedings_doi = {10.1145/565196.565219}
}

@article{Heath2003,
  author = {Samuel A. Heath, Franco P. Preparata, Joel Young},
  title = {Sequencing by Hybridization by Cooperating Direct and Reverse Spectra},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {499--508},
  year = {2003},
  doi = {10.1089/10665270360688147},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 186–193. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {186--193},
  proceedings_doi = {10.1145/565196.565220}
}

@article{Keich2002,
  author = {Uri Keich, Pavel A. Pevzner},
  title = {Finding motifs in the twilight zone},
  journal = {Bioinformatics},
  volume = {18},
  number = {10},
  pages = {1374--1381},
  year = {2002},
  doi = {10.1093/bioinformatics/18.10.1374},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 195–204. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {195--204},
  proceedings_doi = {10.1145/565196.565222}
}

@article{Langmead2003,
  author = {Christopher J. Langmead, Anthony K. Yan, C. Robertson McClung, Bruce R. Donald},
  title = {Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {521--536},
  year = {2003},
  doi = {10.1089/10665270360688165},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 205–215. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {205--215},
  proceedings_doi = {10.1145/565196.565223}
}

@article{Li2003,
  author = {Jia Li, Webb Miller},
  title = {Significance of Interspecies Matches when Evolutionary Rate Varies},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {537--554},
  year = {2003},
  doi = {10.1089/10665270360688174},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 216–224. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {216--224},
  proceedings_doi = {10.1145/565196.565224}
}

@article{Liao2003,
  author = {Li Liao, William Stafford Noble},
  title = {Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {6},
  pages = {857--868},
  year = {2003},
  doi = {10.1089/106652703322756113},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 225–232. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {225--232},
  proceedings_doi = {10.1145/565196.565225}
}

@inproceedings{Mumey2002,
  author = {Brendan M. Mumey, Brian W. Bailey, Edward A. Dratz},
  title = {Revealing protein structures: a new method for mapping antibody epitopes},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 233–240. Association for Computing Machinery, New York, NY, USA.},
  pages = {233--240},
  year = {2002},
  doi = {10.1145/565196.565226},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 233–240. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {233--240},
  proceedings_doi = {10.1145/565196.565226}
}

@article{Ott2003,
  author = {Jürg Ott, Josephine Hoh},
  title = {Set Association Analysis of SNP Case-Control and Microarray Data},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {569--574},
  year = {2003},
  doi = {10.1089/10665270360688192},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 241–245. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {241--245},
  proceedings_doi = {10.1145/565196.565227}
}

@article{Lam2003,
  author = {Fumei Lam, Marina Alexandersson, Lior Pachter},
  title = {Picking Alignments from (Steiner) Trees},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {509--520},
  year = {2003},
  doi = {10.1089/10665270360688156},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 246–253. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {246--253},
  proceedings_doi = {10.1145/565196.565228}
}

@inproceedings{Rash2002,
  author = {Sam Rash, Dan Gusfield},
  title = {String barcoding: uncovering optimal virus signatures},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 254–261. Association for Computing Machinery, New York, NY, USA.},
  pages = {254--261},
  year = {2002},
  doi = {10.1145/565196.565229},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 254–261. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {254--261},
  proceedings_doi = {10.1145/565196.565229}
}

@inproceedings{Segal2002,
  author = {Eran Segal, Yoseph Barash, Itamar Simon, Nir Friedman, Daphne Koller},
  title = {From promoter sequence to expression: a probabilistic framework},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 263–272. Association for Computing Machinery, New York, NY, USA.},
  pages = {263--272},
  year = {2002},
  doi = {10.1145/565196.565231},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 263–272. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {263--272},
  proceedings_doi = {10.1145/565196.565231}
}

@inproceedings{Segal2002,
  author = {Eran Segal, Daphne Koller},
  title = {Probabilistic hierarchical clustering for biological data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 273–280. Association for Computing Machinery, New York, NY, USA.},
  pages = {273--280},
  year = {2002},
  doi = {10.1145/565196.565232},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 273–280. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {273--280},
  proceedings_doi = {10.1145/565196.565232}
}

@article{Siepel2003,
  author = {Adam Siepel},
  title = {An Algorithm to Enumerate Sorting Reversals for Signed Permutations},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {575--597},
  year = {2003},
  doi = {10.1089/10665270360688200},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 281–290. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {281--290},
  proceedings_doi = {10.1145/565196.565233}
}

@article{Sinha2003,
  author = {Saurabh Sinha},
  title = {Discriminative Motifs},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {599--615},
  year = {2003},
  doi = {10.1089/10665270360688219},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 291–298. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {291--298},
  proceedings_doi = {10.1145/565196.565234}
}

@inproceedings{Teodoro2002,
  author = {Miguel L. Teodoro, George N. Phillips, Lydia E. Kavraki},
  title = {A dimensionality reduction approach to modeling protein flexibility},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2002, pp 299–308. Association for Computing Machinery, New York, NY, USA.},
  pages = {299--308},
  year = {2002},
  doi = {10.1145/565196.565235},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 299–308. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {299--308},
  proceedings_doi = {10.1145/565196.565235}
}

@article{Wildenberg2003,
  author = {Andy Wildenberg, Steven Skiena, Pavel Sumazin},
  title = {Deconvolving Sequence Variation in Mixed DNA Populations},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {635--652},
  year = {2003},
  doi = {10.1089/10665270360688237},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 311–320. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {311--320},
  proceedings_doi = {10.1145/565196.565238}
}

@article{Zien2003,
  author = {Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer},
  title = {Microarrays: How Many Do You Need?},
  journal = {Journal of Computational Biology},
  volume = {10},
  number = {3-4},
  pages = {653--667},
  year = {2003},
  doi = {10.1089/10665270360688246},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2002, pp 321–330. Association for Computing Machinery, New York, NY, USA.},
  proceedings_pages = {321--330},
  proceedings_doi = {10.1145/565196.565239}
}