@article{Scott2006,
  author = {Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan},
  title = {Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {133--144},
  year = {2006},
  doi = {10.1089/cmb.2006.13.133},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 1-13, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {1--13},
  proceedings_doi = {10.1007/11415770_1}
}

@article{Jaimovich2006,
  author = {Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman},
  title = {Towards an Integrated Protein–Protein Interaction Network: A Relational Markov Network Approach},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {145--164},
  year = {2006},
  doi = {10.1089/cmb.2006.13.145},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 14-30, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {14--30},
  proceedings_doi = {10.1007/11415770_2}
}

@inproceedings{Gat-Viks2005,
  author = {Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir},
  title = {The Factor Graph Network Model for Biological Systems},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 31-47, Springer, Cham.},
  pages = {31--47},
  year = {2005},
  doi = {10.1007/11415770_3},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 31-47, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {31--47},
  proceedings_doi = {10.1007/11415770_3}
}

@article{Koyutürk2006,
  author = {Mehmet Koyutürk, Yohan Kim, Umut Topkara, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama},
  title = {Pairwise Alignment of Protein Interaction Networks},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {182--199},
  year = {2006},
  doi = {10.1089/cmb.2006.13.182},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 48-65, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {48--65},
  proceedings_doi = {10.1007/11415770_4}
}

@inproceedings{Frey2005,
  author = {Brendan J. Frey, Quaid D. Morris, Mark Robinson, Timothy R. Hughes},
  title = {Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 66-82, Springer, Cham.},
  pages = {66--82},
  year = {2005},
  doi = {10.1007/11415770_5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 66-82, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {66--82},
  proceedings_doi = {10.1007/11415770_5}
}

@article{Lipson2006,
  author = {Doron Lipson, Yonatan Aumann, Amir Ben‐Dor, Nathan Linial, Zohar Yakhini},
  title = {Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {215--228},
  year = {2006},
  doi = {10.1089/cmb.2006.13.215},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 83-100, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {83--100},
  proceedings_doi = {10.1007/11415770_6}
}

@article{Wu2006,
  author = {Kun‐Pin Wu, Jia‐Ming Chang, Jun-Bo Chen, Chi‐Fon Chang, Wen‐Jin Wu, Tai-huang Huang, Ting-Yi Sung, Wen-Lian Hsu},
  title = {RIBRA—An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {229--244},
  year = {2006},
  doi = {10.1089/cmb.2006.13.229},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 103-117, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {103--117},
  proceedings_doi = {10.1007/11415770_9}
}

@inproceedings{Bern2005,
  author = {Marshall Bern, Jindong Chen, Hao Chi Wong},
  title = {Avoiding Local Optima in Single Particle Reconstruction},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 118-132, Springer, Cham.},
  pages = {118--132},
  year = {2005},
  doi = {10.1007/11415770_10},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 118-132, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {118--132},
  proceedings_doi = {10.1007/11415770_10}
}

@article{Zilberstein2006,
  author = {Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini},
  title = {A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {245--266},
  year = {2006},
  doi = {10.1089/cmb.2006.13.245},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 133-151, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {133--151},
  proceedings_doi = {10.1007/11415770_11}
}

@article{Alkan2006,
  author = {Can Alkan, Emre Karakoç, Joseph H. Nadeau, S. Cenk Sahinalp, Kaizhong Zhang},
  title = {RNA-RNA Interaction Prediction and Antisense RNA Target Search},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {267--282},
  year = {2006},
  doi = {10.1089/cmb.2006.13.267},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 152-171, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {152--171},
  proceedings_doi = {10.1007/11415770_12}
}

@article{Bafna2006,
  author = {Vineet Bafna, Haixu Tang, Shaojie Zhang},
  title = {Consensus Folding of Unaligned RNA Sequences Revisited},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {283--295},
  year = {2006},
  doi = {10.1089/cmb.2006.13.283},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 172-187, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {172--187},
  proceedings_doi = {10.1007/11415770_13}
}

@article{Rasmussen2006,
  author = {Kim R. Rasmussen, Jens Stoye, Eugene W. Myers},
  title = {Efficient q-Gram Filters for Finding All ε-Matches over a Given Length},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {296--308},
  year = {2006},
  doi = {10.1089/cmb.2006.13.296},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 189-203, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {189--203},
  proceedings_doi = {10.1007/11415770_15}
}

@article{Sze2006,
  author = {Sing-Hoi Sze, Yue Lu, Qingwu Yang},
  title = {A Polynomial Time Solvable Formulation of Multiple Sequence Alignment},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {309--319},
  year = {2006},
  doi = {10.1089/cmb.2006.13.309},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 204-216, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {204--216},
  proceedings_doi = {10.1007/11415770_16}
}

@article{Gusfield2007,
  author = {Dan Gusfield, Vikas Bansal, Vineet Bafna, Yun S. Song},
  title = {A Decomposition Theory for Phylogenetic Networks and Incompatible Characters},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {10},
  pages = {1247--1272},
  year = {2007},
  doi = {10.1089/cmb.2006.0137},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 217-232, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {217--232},
  proceedings_doi = {10.1007/11415770_17}
}

@inproceedings{Huson2005,
  author = {Daniel H. Huson, Tobias Klöpper, Pete J. Lockhart, Mike A. Steel},
  title = {Reconstruction of Reticulate Networks from Gene Trees},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 233-249, Springer, Cham.},
  pages = {233--249},
  year = {2005},
  doi = {10.1007/11415770_18},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 233-249, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {233--249},
  proceedings_doi = {10.1007/11415770_18}
}

@article{Durand2006,
  author = {Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot},
  title = {A Hybrid Micro–Macroevolutionary Approach to Gene Tree Reconstruction},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {320--335},
  year = {2006},
  doi = {10.1089/cmb.2006.13.320},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 250-264, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {250--264},
  proceedings_doi = {10.1007/11415770_19}
}

@inproceedings{Huynh2005,
  author = {Trinh N.D. Huynh, Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung},
  title = {Constructing a Smallest Refining Galled Phylogenetic Network},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 265-280, Springer, Cham.},
  pages = {265--280},
  year = {2005},
  doi = {10.1007/11415770_20},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 265-280, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {265--280},
  proceedings_doi = {10.1007/11415770_20}
}

@inproceedings{Burstein2005,
  author = {David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor},
  title = {Information Theoretic Approaches to Whole Genome Phylogenies},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 283-295, Springer, Cham.},
  pages = {283--295},
  year = {2005},
  doi = {10.1007/11415770_22},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 283-295, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {283--295},
  proceedings_doi = {10.1007/11415770_22}
}

@inproceedings{Chor2005,
  author = {Benny Chor, Tamir Tuller},
  title = {Maximum Likelihood of Evolutionary Trees Is Hard},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 296-310, Springer, Cham.},
  pages = {296--310},
  year = {2005},
  doi = {10.1007/11415770_23},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 296-310, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {296--310},
  proceedings_doi = {10.1007/11415770_23}
}

@article{Przytycka2006,
  author = {Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand},
  title = {Graph Theoretical Insights into Evolution of Multidomain Proteins},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {351--363},
  year = {2006},
  doi = {10.1089/cmb.2006.13.351},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 311-325, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {311--325},
  proceedings_doi = {10.1007/11415770_24}
}

@article{Frank2005,
  author = {Ari Frank, Stephen Tanner, Vineet Bafna, Pavel Pevzner},
  title = {Peptide sequence tags for fast database search in mass-spectrometry},
  journal = {Journal of Proteome Research},
  volume = {4},
  number = {4},
  pages = {1287--95},
  year = {2005},
  doi = {10.1021/pr050011x},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 326-341, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {326--341},
  proceedings_doi = {10.1007/11415770_25}
}

@article{Wan2005,
  author = {Yunhu Wan, Austin J. Yang, Ting Chen},
  title = {PepHMM: A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search},
  journal = {Analytical Chemistry},
  volume = {78},
  number = {2},
  pages = {432--437},
  year = {2005},
  doi = {10.1021/ac051319a},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 342-356, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {342--356},
  proceedings_doi = {10.1007/11415770_26}
}

@article{Bern2006,
  author = {Marshall Bern, David Theo Goldberg},
  title = {De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {364--378},
  year = {2006},
  doi = {10.1089/cmb.2006.13.364},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 357-372, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {357--372},
  proceedings_doi = {10.1007/11415770_27}
}

@article{Gross2006,
  author = {Samuel S. Gross, Michael R. Brent},
  title = {Using Multiple Alignments to Improve Gene Prediction},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {379--393},
  year = {2006},
  doi = {10.1089/cmb.2006.13.379},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 374-388, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {374--388},
  proceedings_doi = {10.1007/11415770_29}
}

@article{Rätsch2006,
  author = {Gunnar Rätsch, Sören Sonnenburg, Christin Schäfer},
  title = {Learning Interpretable SVMs for Biological Sequence Classification},
  journal = {BMC Bioinformatics},
  volume = {7: S9},
  year = {2006},
  doi = {10.1186/1471-2105-7-s1-s9},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 389-407, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {389--407},
  proceedings_doi = {10.1007/11415770_30}
}

@article{Liu2006,
  author = {Yan Liu, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan},
  title = {Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {394--406},
  year = {2006},
  doi = {10.1089/cmb.2006.13.394},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 408-422, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {408--422},
  proceedings_doi = {10.1007/11415770_31}
}

@inproceedings{Xu2005,
  author = {Jinbo Xu},
  title = {Rapid Protein Side-Chain Packing via Tree Decomposition},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 423-439, Springer, Cham.},
  pages = {423--439},
  year = {2005},
  doi = {10.1007/11415770_32},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 423-439, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {423--439},
  proceedings_doi = {10.1007/11415770_32}
}

@inproceedings{Shatsky2005,
  author = {Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson},
  title = {Recognition of Binding Patterns Common to a Set of Protein Structures},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 440-455, Springer, Cham.},
  pages = {440--455},
  year = {2005},
  doi = {10.1007/11415770_33},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 440-455, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {440--455},
  proceedings_doi = {10.1007/11415770_33}
}

@article{Hertz2006,
  author = {Tomer Hertz, Chen Yanover},
  title = {PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions},
  journal = {BMC Bioinformatics},
  volume = {7: S3},
  year = {2006},
  doi = {10.1186/1471-2105-7-s1-s3},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 456-471, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {456--471},
  proceedings_doi = {10.1007/11415770_34}
}

@article{Chia2006,
  author = {Nicholas Chia, Ralf Bundschuh},
  title = {A Practical Approach to Significance Assessment in Alignment with Gaps},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {429--441},
  year = {2006},
  doi = {10.1089/cmb.2006.13.429},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 474-488, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {474--488},
  proceedings_doi = {10.1007/11415770_36}
}

@article{Valouev2006,
  author = {Anton Valouev, Lei Li, Yu‐Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman},
  title = {Alignment of Optical Maps},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {442--462},
  year = {2006},
  doi = {10.1089/cmb.2006.13.442},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 489-504, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {489--504},
  proceedings_doi = {10.1007/11415770_37}
}

@article{Yeang2006,
  author = {Chen‐Hsiang Yeang, Tommi Jaakkola},
  title = {Modeling the Combinatorial Functions of Multiple Transcription Factors},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {463--480},
  year = {2006},
  doi = {10.1089/cmb.2006.13.463},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 506-521, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {506--521},
  proceedings_doi = {10.1007/11415770_39}
}

@inproceedings{Kaplan2005,
  author = {Tommy Kaplan, Nir Friedman, Hanah Margalit},
  title = {Predicting Transcription Factor Binding Sites Using Structural Knowledge},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 522-537, Springer, Cham.},
  pages = {522--537},
  year = {2005},
  doi = {10.1007/11415770_40},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 522-537, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {522--537},
  proceedings_doi = {10.1007/11415770_40}
}

@inproceedings{Middendorf2005,
  author = {Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris H. Wiggins, Christina Leslie},
  title = {Motif Discovery Through Predictive Modeling of Gene Regulation},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 538-552, Springer, Cham.},
  pages = {538--552},
  year = {2005},
  doi = {10.1007/11415770_41},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 538-552, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {538--552},
  proceedings_doi = {10.1007/11415770_41}
}

@article{Halperin2006,
  author = {Eran Halperin, Elad Hazan},
  title = {HAPLOFREQ—Estimating Haplotype Frequencies Efficiently},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {481--500},
  year = {2006},
  doi = {10.1089/cmb.2006.13.481},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 553-568, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {553--568},
  proceedings_doi = {10.1007/11415770_42}
}

@inproceedings{Bafna2005,
  author = {Vineet Bafna, Vikas Bansal},
  title = {Improved Recombination Lower Bounds for Haplotype Data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 569-584, Springer, Cham.},
  pages = {569--584},
  year = {2005},
  doi = {10.1007/11415770_43},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 569-584, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {569--584},
  proceedings_doi = {10.1007/11415770_43}
}

@article{Ding2006,
  author = {Zhihong Ding, Vladimir Filkov, Dan Gusfield},
  title = {A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {522--553},
  year = {2006},
  doi = {10.1089/cmb.2006.13.522},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 585-600, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {585--600},
  proceedings_doi = {10.1007/11415770_44}
}

@article{Mazowita2006,
  author = {Matthew Mazowita, Lani Haque, David Sankoff},
  title = {Stability of Rearrangement Measures in the Comparison of Genome Sequences},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {554--566},
  year = {2006},
  doi = {10.1089/cmb.2006.13.554},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 603-614, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {603--614},
  proceedings_doi = {10.1007/11415770_46}
}

@article{Bergeron2006,
  author = {Anne Bergeron, Julia Mixtacki, Jens Stoye},
  title = {On Sorting by Translocations},
  journal = {Journal of Computational Biology},
  volume = {13},
  number = {2},
  pages = {567--578},
  year = {2006},
  doi = {10.1089/cmb.2006.13.567},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 615-630, Springer, Cham.},
  proceedings_volume = {3500},
  proceedings_pages = {615--630},
  proceedings_doi = {10.1007/11415770_47}
}