@inproceedings{Srinivasan2006,
  author = {Balaji S. Srinivasan, Antal F. Novak, Jason A. Flannick, Serafim Batzoglou, Harley H. McAdams},
  title = {Integrated Protein Interaction Networks for 11 Microbes},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 1-14, Springer, Cham.},
  pages = {1--14},
  year = {2006},
  doi = {10.1007/11732990_1},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 1-14, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {1--14},
  proceedings_doi = {10.1007/11732990_1}
}

@article{Ye2007,
  author = {Xiaoduan Ye, Alan M. Friedman, Chris Bailey‐Kellogg},
  title = {Hypergraph Model of Multi-Residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {777--790},
  year = {2007},
  doi = {10.1089/cmb.2007.r016},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 15-29, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {15--29},
  proceedings_doi = {10.1007/11732990_2}
}

@inproceedings{Chor2006,
  author = {Benny Chor, Tamir Tuller},
  title = {Biological Networks: Comparison, Conservation, and Evolutionary Trees},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 30-44, Springer, Cham.},
  pages = {30--44},
  year = {2006},
  doi = {10.1007/11732990_3},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 30-44, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {30--44},
  proceedings_doi = {10.1007/11732990_3}
}

@article{Koyutürk2007,
  author = {Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama},
  title = {Assessing Significance of Connectivity and Conservation in Protein Interaction Networks},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {747--764},
  year = {2007},
  doi = {10.1089/cmb.2007.r014},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 45-59, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {45--59},
  proceedings_doi = {10.1007/11732990_4}
}

@inproceedings{Wang2006,
  author = {Ling Wang, Marco Ramoni, Paola Sebastiani},
  title = {Clustering Short Gene Expression Profiles},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 60-68, Springer, Cham.},
  pages = {60--68},
  year = {2006},
  doi = {10.1007/11732990_5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 60-68, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {60--68},
  proceedings_doi = {10.1007/11732990_5}
}

@article{Kaminski2007,
  author = {Naftali Kaminski, Ziv Bar‐Joseph},
  title = {A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {3},
  pages = {324--338},
  year = {2007},
  doi = {10.1089/cmb.2007.0001},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 69-82, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {69--82},
  proceedings_doi = {10.1007/11732990_6}
}

@article{Grossmann2007,
  author = {Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron},
  title = {Improved detection of overrepresentation of Gene-Ontology annotations with parent–child analysis},
  journal = {Bioinformatics},
  volume = {23},
  number = {22},
  pages = {3024--3031},
  year = {2007},
  doi = {10.1093/bioinformatics/btm440},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 85-98, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {85--98},
  proceedings_doi = {10.1007/11732990_9}
}

@inproceedings{Vashist2006,
  author = {Akshay Vashist, Casimir Kulikowski, Ilya Muchnik},
  title = {Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 99-113, Springer, Cham.},
  pages = {99--113},
  year = {2006},
  doi = {10.1007/11732990_10},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 99-113, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {99--113},
  proceedings_doi = {10.1007/11732990_10}
}

@article{Huang2007,
  author = {Jim Huang, Quaid Morris, Brendan J. Frey},
  title = {Bayesian Inference of MicroRNA Targets from Sequence and Expression Data},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {550--563},
  year = {2007},
  doi = {10.1089/cmb.2007.r002},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 114-129, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {114--129},
  proceedings_doi = {10.1007/11732990_11}
}

@inproceedings{Alkan2006,
  author = {Can Alkan, Emre Karakoc, S. Cenk Sahinalp, Peter Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler},
  title = {RNA Secondary Structure Prediction Via Energy Density Minimization},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 130-142, Springer, Cham.},
  pages = {130--142},
  year = {2006},
  doi = {10.1007/11732990_12},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 130-142, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {130--142},
  proceedings_doi = {10.1007/11732990_12}
}

@article{Han2008,
  author = {Buhm Han, Banu Dost, Vineet Bafna, Shaojie Zhang},
  title = {Structural Alignment of Pseudoknotted RNA},
  journal = {Journal of Computational Biology},
  volume = {15},
  number = {5},
  pages = {489--504},
  year = {2008},
  doi = {10.1089/cmb.2007.0214},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 143-158, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {143--158},
  proceedings_doi = {10.1007/11732990_13}
}

@inproceedings{Do2006,
  author = {Chuong B. Do, Samuel S. Gross, Serafim Batzoglou},
  title = {CONTRAlign: Discriminative Training for Protein Sequence Alignment},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 160-174, Springer, Cham.},
  pages = {160--174},
  year = {2006},
  doi = {10.1007/11732990_15},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 160-174, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {160--174},
  proceedings_doi = {10.1007/11732990_15}
}

@article{Cameron2007,
  author = {Michael J. Cameron, Yaniv Bernstein, Hugh Williams},
  title = {Clustered Sequence Representation for Fast Homology Search},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {594--614},
  year = {2007},
  doi = {10.1089/cmb.2007.r005},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 175-189, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {175--189},
  proceedings_doi = {10.1007/11732990_16}
}

@inproceedings{Siepel2006,
  author = {Adam Siepel, Katherine S. Pollard, David Haussler},
  title = {New Methods for Detecting Lineage-Specific Selection},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 190-205, Springer, Cham.},
  pages = {190--205},
  year = {2006},
  doi = {10.1007/11732990_17},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 190-205, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {190--205},
  proceedings_doi = {10.1007/11732990_17}
}

@inproceedings{Csűrös2006,
  author = {Miklós Csűrös, István Miklós},
  title = {A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 206-220, Springer, Cham.},
  pages = {206--220},
  year = {2006},
  doi = {10.1007/11732990_18},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 206-220, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {206--220},
  proceedings_doi = {10.1007/11732990_18}
}

@inproceedings{Pattengale2006,
  author = {Nicholas D. Pattengale, Bernard M.E. Moret},
  title = {A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 221-230, Springer, Cham.},
  pages = {221--230},
  year = {2006},
  doi = {10.1007/11732990_19},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 221-230, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {221--230},
  proceedings_doi = {10.1007/11732990_19}
}

@article{Song2007,
  author = {Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H. Langley, Yufeng Wu},
  title = {Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {10},
  pages = {1273--1286},
  year = {2007},
  doi = {10.1089/cmb.2007.0096},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 231-245, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {231--245},
  proceedings_doi = {10.1007/11732990_20}
}

@article{Angelov2007,
  author = {Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim},
  title = {Efficient Enumeration of Phylogenetically Informative Substrings},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {701--723},
  year = {2007},
  doi = {10.1089/cmb.2007.r011},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 248-264, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {248--264},
  proceedings_doi = {10.1007/11732990_22}
}

@inproceedings{Snir2006,
  author = {Sagi Snir, Lior Pachter},
  title = {Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 265-280, Springer, Cham.},
  pages = {265--280},
  year = {2006},
  doi = {10.1007/11732990_23},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 265-280, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {265--280},
  proceedings_doi = {10.1007/11732990_23}
}

@inproceedings{Daskalakis2006,
  author = {Constantinos Daskalakis, Cameron Hill, Alexandar Jaffe, Radu Mihaescu, Elehanan Mossel, Satish Rao},
  title = {Maximal Accurate Forests from Distance Matrices},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 281-295, Springer, Cham.},
  pages = {281--295},
  year = {2006},
  doi = {10.1007/11732990_24},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 281-295, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {281--295},
  proceedings_doi = {10.1007/11732990_24}
}

@article{Heckerman2007,
  author = {David Heckerman, Carl Kadie, Jennifer Listgarten},
  title = {Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {736--746},
  year = {2007},
  doi = {10.1089/cmb.2007.r013},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 296-308, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {296--308},
  proceedings_doi = {10.1007/11732990_25}
}

@inproceedings{Menchetti2006,
  author = {Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato},
  title = {Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 309-320, Springer, Cham.},
  pages = {309--320},
  year = {2006},
  doi = {10.1007/11732990_26},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 309-320, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {309--320},
  proceedings_doi = {10.1007/11732990_26}
}

@inproceedings{Przytycka2006,
  author = {Teresa M. Przytycka},
  title = {An Important Connection Between Network Motifs and Parsimony Models},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 321-335, Springer, Cham.},
  pages = {321--335},
  year = {2006},
  doi = {10.1007/11732990_27},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 321-335, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {321--335},
  proceedings_doi = {10.1007/11732990_27}
}

@inproceedings{Scheid2006,
  author = {Stefanie Scheid, Rainer Spang},
  title = {Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 338-347, Springer, Cham.},
  pages = {338--347},
  year = {2006},
  doi = {10.1007/11732990_29},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 338-347, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {338--347},
  proceedings_doi = {10.1007/11732990_29}
}

@inproceedings{Wang2006,
  author = {Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano},
  title = {Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 348-362, Springer, Cham.},
  pages = {348--362},
  year = {2006},
  doi = {10.1007/11732990_30},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 348-362, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {348--362},
  proceedings_doi = {10.1007/11732990_30}
}

@article{Bandeira2007,
  author = {Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner},
  title = {Protein identification by spectral networks analysis},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {104},
  number = {15},
  pages = {6140--6145},
  year = {2007},
  doi = {10.1073/pnas.0701130104},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 363-378, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {363--378},
  proceedings_doi = {10.1007/11732990_31}
}

@article{Chennubhotla2007,
  author = {Chakra Chennubhotla, İvet Bahar},
  title = {Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {765--776},
  year = {2007},
  doi = {10.1089/cmb.2007.r015},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 379-393, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {379--393},
  proceedings_doi = {10.1007/11732990_32}
}

@article{Thomas2007,
  author = {Shawna Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato},
  title = {Simulating Protein Motions with Rigidity Analysis},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {839--855},
  year = {2007},
  doi = {10.1089/cmb.2007.r019},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 394-409, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {394--409},
  proceedings_doi = {10.1007/11732990_33}
}

@article{Chiang2007,
  author = {Tsung-Han Chiang, Mehmet Serkan Apaydın, Douglas L. Brutlag, David Hsu, Jean‐Claude Latombe},
  title = {Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {578--593},
  year = {2007},
  doi = {10.1089/cmb.2007.r004},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 410-424, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {410--424},
  proceedings_doi = {10.1007/11732990_34}
}

@inproceedings{Messer2006,
  author = {Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt},
  title = {Alignment Statistics for Long-Range Correlated Genomic Sequences},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 426-440, Springer, Cham.},
  pages = {426--440},
  year = {2006},
  doi = {10.1007/11732990_36},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 426-440, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {426--440},
  proceedings_doi = {10.1007/11732990_36}
}

@inproceedings{Kececioglu2006,
  author = {John Kececioglu, Eagu Kim},
  title = {Simple and Fast Inverse Alignment},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 441-455, Springer, Cham.},
  pages = {441--455},
  year = {2006},
  doi = {10.1007/11732990_37},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 441-455, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {441--455},
  proceedings_doi = {10.1007/11732990_37}
}

@article{Andersson2007,
  author = {Samuel A. Andersson, Jens Lagergren},
  title = {Motif Yggdrasil: Sampling Sequence Motifs from a Tree Mixture Model},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {682--697},
  year = {2007},
  doi = {10.1089/cmb.2007.r010},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 458-472, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {458--472},
  proceedings_doi = {10.1007/11732990_39}
}

@article{Wexler2007,
  author = {Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson},
  title = {A Study of Accessible Motifs and RNA Folding Complexity},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {6},
  pages = {856--872},
  year = {2007},
  doi = {10.1089/cmb.2007.r020},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 473-487, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {473--487},
  proceedings_doi = {10.1007/11732990_40}
}

@article{Xu2007,
  author = {Jinbo Xu, Feng Jiao, Bonnie Berger},
  title = {A Parameterized Algorithm for Protein Structure Alignment},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {564--577},
  year = {2007},
  doi = {10.1089/cmb.2007.r003},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 488-499, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {488--499},
  proceedings_doi = {10.1007/11732990_41}
}

@inproceedings{Chen2006,
  author = {Brian Y. Chen, Viacheslav Y. Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas M. Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki},
  title = {Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 500-515, Springer, Cham.},
  pages = {500--515},
  year = {2006},
  doi = {10.1007/11732990_42},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 500-515, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {500--515},
  proceedings_doi = {10.1007/11732990_42}
}

@article{Xie2007,
  author = {Wei Xie, Nikolaos V. Sahinidis},
  title = {A Reduction-Based Exact Algorithm for the Contact Map Overlap Problem},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {637--654},
  year = {2007},
  doi = {10.1089/cmb.2007.r007},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 516-529, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {516--529},
  proceedings_doi = {10.1007/11732990_43}
}

@article{Georgiev2008,
  author = {Ivelin S. Georgiev, Ryan Lilien, Bruce R. Donald},
  title = {The minimized dead‐end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles},
  journal = {Journal of Computational Chemistry},
  volume = {29},
  number = {10},
  pages = {1527--1542},
  year = {2008},
  doi = {10.1002/jcc.20909},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 530-545, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {530--545},
  proceedings_doi = {10.1007/11732990_44}
}

@article{Bader2007,
  author = {Martin Bader, Enno Ohlebusch},
  title = {Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions},
  journal = {Journal of Computational Biology},
  volume = {14},
  number = {5},
  pages = {615--636},
  year = {2007},
  doi = {10.1089/cmb.2007.r006},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 563-577, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {563--577},
  proceedings_doi = {10.1007/11732990_46}
}

@inproceedings{Fu2006,
  author = {Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang},
  title = {A Parsimony Approach to Genome-Wide Ortholog Assignment},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 578-594, Springer, Cham.},
  pages = {578--594},
  year = {2006},
  doi = {10.1007/11732990_47},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 578-594, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {578--594},
  proceedings_doi = {10.1007/11732990_47}
}

@article{Yeang2007,
  author = {Chen-Hsiang Yeang, Jeremy F. J. Darot, Harry. F. Noller, David Haussler},
  title = {Detecting the Coevolution of Biosequences An Example of RNA Interaction Prediction},
  journal = {Molecular Biology and Evolution},
  volume = {24},
  number = {10},
  pages = {2354},
  year = {2007},
  doi = {10.1093/molbev/msm189},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 595-610, Springer, Cham.},
  proceedings_volume = {3909},
  proceedings_pages = {595--610},
  proceedings_doi = {10.1007/11732990_48}
}