@article{Amir2011,
  author = {Amnon Amir, Or Zuk},
  title = {Bacterial community reconstruction using compressed sensing},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1723--1741},
  year = {2011},
  doi = {10.1089/cmb.2011.0189},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 1-15, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {1--15},
  proceedings_doi = {10.1007/978-3-642-20036-6_1}
}

@inproceedings{Bhatia2011,
  author = {Swapnil Bhatia, Yong J. Kil, Beatrix Ueberheide, Brian Chait, Lemmuel L. Tayo, Lourdes J. Cruz, Bingwen Lu, John R. Yates III, Marshall Bern},
  title = {Constrained De Novo Sequencing of Peptides with Application to Conotoxins},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 16-30, Springer, Cham.},
  pages = {16--30},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_2},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 16-30, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {16--30},
  proceedings_doi = {10.1007/978-3-642-20036-6_2}
}

@inproceedings{Chindelevitch2011,
  author = {Leonid Chindelevitch, Aviv Regev, Bonnie Berger},
  title = {Metabolic Network Analysis Demystified},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 31-33, Springer, Cham.},
  pages = {31--33},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_3},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 31-33, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {31--33},
  proceedings_doi = {10.1007/978-3-642-20036-6_3}
}

@article{Chindelevitch2012,
  author = {Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben S. Sidders, Christoph Brockel, Enoch S. Huang},
  title = {Causal reasoning on biological networks: interpreting transcriptional changes},
  journal = {Bioinformatics},
  volume = {28},
  number = {8},
  pages = {1114--1121},
  year = {2012},
  doi = {10.1093/bioinformatics/bts090},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 34-37, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {34--37},
  proceedings_doi = {10.1007/978-3-642-20036-6_4}
}

@inproceedings{Donmez2011,
  author = {Nilgun Donmez and Michael Brudno},
  title = {Hapsembler: An Assembler for Highly Polymorphic Genomes},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 38-52, Springer, Cham.},
  pages = {38--52},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 38-52, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {38--52},
  proceedings_doi = {10.1007/978-3-642-20036-6_5}
}

@article{Erten2011,
  author = {Sinan Erten, Gürkan Bebek, Mehmet Koyutürk},
  title = {Vavien : An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1561--1574},
  year = {2011},
  doi = {10.1089/cmb.2011.0154},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 54-68, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {54--68},
  proceedings_doi = {10.1007/978-3-642-20036-6_7}
}

@article{Heath2011,
  author = {Allison P. Heath, George N. Bennett, Lydia E. Kavraki},
  title = {An Algorithm for Efficient Identification of Branched Metabolic Pathways},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1575--1597},
  year = {2011},
  doi = {10.1089/cmb.2011.0165},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 70-84, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {70--84},
  proceedings_doi = {10.1007/978-3-642-20036-6_9}
}

@article{Hickey2011,
  author = {Glenn Hickey, Mathieu Blanchette},
  title = {A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1449--1464},
  year = {2011},
  doi = {10.1089/cmb.2011.0157},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 85-103, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {85--103},
  proceedings_doi = {10.1007/978-3-642-20036-6_10}
}

@article{Hormozdiari2011,
  author = {Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew McPherson, Evan E. Eichler, S. Cenk Sahinalp},
  title = {Simultaneous structural variation discovery among multiple paired-end sequenced genomes},
  journal = {Genome Research},
  volume = {21},
  number = {12},
  pages = {2203--2212},
  year = {2011},
  doi = {10.1101/gr.120501.111},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 104-105, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {104--105},
  proceedings_doi = {10.1007/978-3-642-20036-6_11}
}

@inproceedings{Huang2011,
  author = {Jim C. Huang and Nebojsa Jojic},
  title = {Variable Selection through Correlation Sifting},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 106-123, Springer, Cham.},
  pages = {106--123},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_12},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 106-123, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {106--123},
  proceedings_doi = {10.1007/978-3-642-20036-6_12}
}

@inproceedings{Jiang2011,
  author = {Shuai Jiang and Max A. Alekseyev},
  title = {Weighted Genomic Distance Can Hardly Impose a Bound on the Proportion of Transpositions},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 124-133, Springer, Cham.},
  pages = {124--133},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_13},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 124-133, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {124--133},
  proceedings_doi = {10.1007/978-3-642-20036-6_13}
}

@article{Kim2011,
  author = {Jaebum Kim, Jian Ma},
  title = {PSAR: measuring multiple sequence alignment reliability by probabilistic sampling},
  journal = {Nucleic Acids Research},
  volume = {39},
  number = {15},
  pages = {6359--6368},
  year = {2011},
  doi = {10.1093/nar/gkr334},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 134-135, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {134--135},
  proceedings_doi = {10.1007/978-3-642-20036-6_14}
}

@article{Kirkpatrick2011,
  author = {Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin},
  title = {Pedigree Reconstruction Using Identity by Descent},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1481--1493},
  year = {2011},
  doi = {10.1089/cmb.2011.0156},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 136-152, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {136--152},
  proceedings_doi = {10.1007/978-3-642-20036-6_15}
}

@article{Leiserson2011,
  author = {Mark D.M. Leiserson, Diana Tatar, Lenore Cowen, Benjamin Hescott},
  title = {Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1399--1409},
  year = {2011},
  doi = {10.1089/cmb.2011.0191},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 154-167, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {154--167},
  proceedings_doi = {10.1007/978-3-642-20036-6_17}
}

@article{Li2011,
  author = {Wei Li, Jianxing Feng, Tao Jiang},
  title = {IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1693--1707},
  year = {2011},
  doi = {10.1089/cmb.2011.0171},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 168-188, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {168--188},
  proceedings_doi = {10.1007/978-3-642-20036-6_18}
}

@article{Li2011,
  author = {Xin Li, Jing Li},
  title = {Haplotype Reconstruction in Large Pedigrees with Untyped Individuals through IBD Inference},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1411--1421},
  year = {2011},
  doi = {10.1089/cmb.2011.0167},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 189-203, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {189--203},
  proceedings_doi = {10.1007/978-3-642-20036-6_19}
}

@article{Lin2011,
  author = {Tien-ho Lin, Ziv Bar‐Joseph, Robert F. Murphy},
  title = {Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1709--1722},
  year = {2011},
  doi = {10.1089/cmb.2011.0193},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 204-221, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {204--221},
  proceedings_doi = {10.1007/978-3-642-20036-6_20}
}

@article{Martin2011,
  author = {Jeffrey W. Martin, Anthony K. Yan, Chris Bailey‐Kellogg, Pei Zhou, Bruce R. Donald},
  title = {A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-Oligomers from NOEs and RDCs},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1507--1523},
  year = {2011},
  doi = {10.1089/cmb.2011.0173},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 222-237, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {222--237},
  proceedings_doi = {10.1007/978-3-642-20036-6_21}
}

@article{Medvedev2011,
  author = {Paul Medvedev, Son Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner},
  title = {Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1625--1634},
  year = {2011},
  doi = {10.1089/cmb.2011.0151},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 238-251, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {238--251},
  proceedings_doi = {10.1007/978-3-642-20036-6_22}
}

@article{Misra2011,
  author = {Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz},
  title = {An Optimization-Based Sampling Scheme for Phylogenetic Trees},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1599--1609},
  year = {2011},
  doi = {10.1089/cmb.2011.0164},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 252-266, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {252--266},
  proceedings_doi = {10.1007/978-3-642-20036-6_23}
}

@article{Mohimani2011,
  author = {Hosein Mohimani, Wei-Ting Liu, Yuliang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner},
  title = {Multiplex De Novo Sequencing of Peptide Antibiotics},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1371--1381},
  year = {2011},
  doi = {10.1089/cmb.2011.0158},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 267-281, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {267--281},
  proceedings_doi = {10.1007/978-3-642-20036-6_24}
}

@article{Newkirk2011,
  author = {Daniel A. Newkirk, Jacob Biesinger, Alvin Chon, Kyoko Yokomori, Xiaohui Xie},
  title = {AREM: Aligning Short Reads from ChIP-Sequencing by Expectation Maximization},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1495--1505},
  year = {2011},
  doi = {10.1089/cmb.2011.0185},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 283-297, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {283--297},
  proceedings_doi = {10.1007/978-3-642-20036-6_26}
}

@inproceedings{Ng2011,
  author = {Julio Ng, Amihood Amir, Pavel A. Pevzner},
  title = {Blocked Pattern Matching Problem and Its Applications in Proteomics},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 298-319, Springer, Cham.},
  pages = {298--319},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_27},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 298-319, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {298--319},
  proceedings_doi = {10.1007/978-3-642-20036-6_27}
}

@article{Parker2011,
  author = {Andrew S. Parker, Karl E. Griswold, Chris Bailey‐Kellogg},
  title = {Optimization of Combinatorial Mutagenesis},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1743--1756},
  year = {2011},
  doi = {10.1089/cmb.2011.0152},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 321-335, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {321--335},
  proceedings_doi = {10.1007/978-3-642-20036-6_29}
}

@inproceedings{Peng2011,
  author = {Yu Peng, Henry C.M. Leung, S.M. Yiu, Francis Y.L. Chin},
  title = {T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 337-338, Springer, Cham.},
  pages = {337--338},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_31},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 337-338, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {337--338},
  proceedings_doi = {10.1007/978-3-642-20036-6_31}
}

@article{Petri2011,
  author = {Tobias Petri, Robert Küffner, Ralf Zimmer},
  title = {Experiment Specific Expression Patterns},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1423--1435},
  year = {2011},
  doi = {10.1089/cmb.2011.0159},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 339-354, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {339--354},
  proceedings_doi = {10.1007/978-3-642-20036-6_32}
}

@inproceedings{Prat2011,
  author = {Yosef Prat, Menachem Fromer, Michal Linial, Nathan Linial},
  title = {Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 355-357, Springer, Cham.},
  pages = {355--357},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_33},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 355-357, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {355--357},
  proceedings_doi = {10.1007/978-3-642-20036-6_33}
}

@inproceedings{Reuveni2011,
  author = {Shlomi Reuveni, Isaac Meilijson, Martin Kupiec, Eytan Ruppin, Tamir Tuller},
  title = {A Ribosome Flow Model for Analyzing Translation Elongation},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 358-360, Springer, Cham.},
  pages = {358--360},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_34},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 358-360, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {358--360},
  proceedings_doi = {10.1007/978-3-642-20036-6_34}
}

@inproceedings{Roberts2011,
  author = {Kyle E. Roberts, Patrick R. Cushing, Prisca Boisguerin, Dean R. Madden, Bruce R. Donald},
  title = {Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 361-376, Springer, Cham.},
  pages = {361--376},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_35},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 361-376, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {361--376},
  proceedings_doi = {10.1007/978-3-642-20036-6_35}
}

@article{Scheubert2011,
  author = {Kerstin Scheubert, Franziska Hufsky, Florian Rasche, Sebastian Böcker},
  title = {Computing Fragmentation Trees from Metabolite Multiple Mass Spectrometry Data},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1383--1397},
  year = {2011},
  doi = {10.1089/cmb.2011.0168},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 377-391, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {377--391},
  proceedings_doi = {10.1007/978-3-642-20036-6_36}
}

@inproceedings{Sefer2011,
  author = {Emre Sefer and Carl Kingsford},
  title = {Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 392-407, Springer, Cham.},
  pages = {392--407},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_37},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 392-407, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {392--407},
  proceedings_doi = {10.1007/978-3-642-20036-6_37}
}

@article{Shenker2011,
  author = {Solomon Shenker, Charles W. O'Donnell, Srinivas Devadas, Bonnie Berger, Jérôme Waldispühl},
  title = {Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble Models},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1635--1647},
  year = {2011},
  doi = {10.1089/cmb.2011.0176},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 408-423, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {408--423},
  proceedings_doi = {10.1007/978-3-642-20036-6_38}
}

@article{Silverbush2011,
  author = {Dana Silverbush, Michael Elberfeld, Roded Sharan},
  title = {Optimally Orienting Physical Networks},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1437--1448},
  year = {2011},
  doi = {10.1089/cmb.2011.0163},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 424-436, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {424--436},
  proceedings_doi = {10.1007/978-3-642-20036-6_39}
}

@article{Gao2011,
  author = {Song Gao, Wing‐Kin Sung, Niranjan Nagarajan},
  title = {Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1681--1691},
  year = {2011},
  doi = {10.1089/cmb.2011.0170},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 437-451, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {437--451},
  proceedings_doi = {10.1007/978-3-642-20036-6_40}
}

@article{Sul2011,
  author = {Jae Hoon Sul, Buhm Han, Eleazar Eskin},
  title = {Increasing Power of Groupwise Association Test with Likelihood Ratio Test},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1611--1624},
  year = {2011},
  doi = {10.1089/cmb.2011.0161},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 452-467, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {452--467},
  proceedings_doi = {10.1007/978-3-642-20036-6_41}
}

@inproceedings{Tarpine2011,
  author = {Ryan Tarpine, Fumei Lam, Sorin Istrail},
  title = {Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 468-482, Springer, Cham.},
  pages = {468--482},
  year = {2011},
  doi = {10.1007/978-3-642-20036-6_42},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 468-482, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {468--482},
  proceedings_doi = {10.1007/978-3-642-20036-6_42}
}

@article{Tripathy2011,
  author = {Chittaranjan Tripathy, Jianyang Zeng, Pei Zhou, Bruce R. Donald},
  title = {Protein loop closure using orientational restraints from NMR data},
  journal = {Proteins},
  volume = {80},
  number = {2},
  pages = {433--453},
  year = {2011},
  doi = {10.1002/prot.23207},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 483-498, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {483--498},
  proceedings_doi = {10.1007/978-3-642-20036-6_43}
}

@article{Vandin2011,
  author = {Fabio Vandin, Eli Upfal, Benjamin J. Raphael},
  title = {De novo discovery of mutated driver pathways in cancer},
  journal = {Genome Research},
  volume = {22},
  number = {2},
  pages = {375--385},
  year = {2011},
  doi = {10.1101/gr.120477.111},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 499-500, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {499--500},
  proceedings_doi = {10.1007/978-3-642-20036-6_44}
}

@article{Waldispühl2011,
  author = {Jérôme Waldispühl, Yann Ponty},
  title = {An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes Under Evolutionary Pressure},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1465--1479},
  year = {2011},
  doi = {10.1089/cmb.2011.0181},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 501-515, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {501--515},
  proceedings_doi = {10.1007/978-3-642-20036-6_45}
}

@article{Wauthier2011,
  author = {Fabian L. Wauthier, Michael I. Jordan, Nebojša Jojić},
  title = {Nonparametric Combinatorial Sequence Models},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1649--1660},
  year = {2011},
  doi = {10.1089/cmb.2011.0175},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 516-530, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {516--530},
  proceedings_doi = {10.1007/978-3-642-20036-6_46}
}

@article{Yu2011,
  author = {Yun Yu, Tandy Warnow, Luay Nakhleh},
  title = {Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1543--1559},
  year = {2011},
  doi = {10.1089/cmb.2011.0174},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 531-545, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {531--545},
  proceedings_doi = {10.1007/978-3-642-20036-6_47}
}

@article{Zakov2011,
  author = {Shay Zakov, Yoav Goldberg, Michael Elhadad, Michal Ziv-Ukelson},
  title = {Rich Parameterization Improves RNA Structure Prediction},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1525--1542},
  year = {2011},
  doi = {10.1089/cmb.2011.0184},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 546-562, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {546--562},
  proceedings_doi = {10.1007/978-3-642-20036-6_48}
}

@article{Zeng2011,
  author = {Jianyang Zeng, Kyle E. Roberts, Pei Zhou, Bruce R. Donald},
  title = {A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data},
  journal = {Journal of Computational Biology},
  volume = {18},
  number = {11},
  pages = {1661--1679},
  year = {2011},
  doi = {10.1089/cmb.2011.0172},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2011. Lecture Notes in Computer Science, vol 6577, pp 563-578, Springer, Cham.},
  proceedings_volume = {6577},
  proceedings_pages = {563--578},
  proceedings_doi = {10.1007/978-3-642-20036-6_49}
}