@article{Zuo2017,
  author = {Chandler Zuo, Kailei Chen, Sündüz Keleş},
  title = {A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {472--485},
  year = {2017},
  doi = {10.1089/cmb.2016.0138},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 19-36, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {19--36},
  proceedings_doi = {10.1007/978-3-319-31957-5_2}
}

@article{Wang2017,
  author = {Hao Wang, Joel McManus, Carl Kingsford},
  title = {Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {486--500},
  year = {2017},
  doi = {10.1089/cmb.2016.0147},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 37-52, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {37--52},
  proceedings_doi = {10.1007/978-3-319-31957-5_3}
}

@article{Kshirsagar2017,
  author = {Meghana Kshirsagar, Keerthiram Murugesan, Jaime G. Carbonell, Judith Klein-Seetharaman},
  title = {Multitask Matrix Completion for Learning Protein Interactions Across Diseases},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {501--514},
  year = {2017},
  doi = {10.1089/cmb.2016.0201},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 53-64, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {53--64},
  proceedings_doi = {10.1007/978-3-319-31957-5_4}
}

@article{Cristea2017,
  author = {Simona Cristea, Jack Kuipers, Niko Beerenwinkel},
  title = {pathTiMEx: joint inference of mutually exclusive cancer pathways and their progression dynamics},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {603--615},
  year = {2017},
  doi = {10.1089/cmb.2016.0171},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 65-82, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {65--82},
  proceedings_doi = {10.1007/978-3-319-31957-5_5}
}

@article{Donmez2017,
  author = {Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, S. Cenk Sahinalp},
  title = {Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {515--523},
  year = {2017},
  doi = {10.1089/cmb.2016.0148},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 83-94, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {83--94},
  proceedings_doi = {10.1007/978-3-319-31957-5_6}
}

@article{Fusi2017,
  author = {Nicolò Fusi, Jennifer Listgarten},
  title = {Flexible Modeling of Genetic Effects on Function-Valued Traits},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {524--535},
  year = {2017},
  doi = {10.1089/cmb.2016.0174},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 95-110, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {95--110},
  proceedings_doi = {10.1007/978-3-319-31957-5_7}
}

@inproceedings{Sobih2016,
  author = {Ahmed Sobih, Alexandru I. Tomescu, Veli Mäkinen},
  title = {MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 111-121, Springer, Cham.},
  pages = {111--121},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5_8},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 111-121, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {111--121},
  proceedings_doi = {10.1007/978-3-319-31957-5_8},
  preprint_id = {bioRxiv 038208},
  preprint_doi = {10.1101/038208}
}

@article{Hallen2017,
  author = {Mark A. Hallen, Jonathan D. Jou, Bruce R. Donald},
  title = {LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {536--546},
  year = {2017},
  doi = {10.1089/cmb.2016.0136},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 122-136, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {122--136},
  proceedings_doi = {10.1007/978-3-319-31957-5_9}
}

@article{Pellow2017,
  author = {David Pellow, Darya Filippova, Carl Kingsford},
  title = {Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {547--557},
  year = {2017},
  doi = {10.1089/cmb.2016.0155},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 137-151, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {137--151},
  proceedings_doi = {10.1007/978-3-319-31957-5_10}
}

@article{Tomescu2017,
  author = {Alexandru I. Tomescu, Paul Medvedev},
  title = {Safe and complete contig assembly through omnitigs},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {590--602},
  year = {2017},
  doi = {10.1089/cmb.2016.0141},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 152-163, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {152--163},
  proceedings_doi = {10.1007/978-3-319-31957-5_11},
  preprint_id = {arXiv:1601.02932},
  preprint_doi = {10.48550/arXiv.1601.02932}
}

@article{Artyomenko2017,
  author = {Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky},
  title = {Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {558--570},
  year = {2017},
  doi = {10.1089/cmb.2016.0146},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 164-175, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {164--175},
  proceedings_doi = {10.1007/978-3-319-31957-5_12},
  preprint_id = {bioRxiv 036392},
  preprint_doi = {10.1101/036392}
}

@article{Sahlin2017,
  author = {Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad},
  title = {Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {581--589},
  year = {2017},
  doi = {10.1089/cmb.2016.0124},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 176-188, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {176--188},
  proceedings_doi = {10.1007/978-3-319-31957-5_13},
  preprint_id = {bioRxiv 036707},
  preprint_doi = {10.1101/036707}
}

@article{Shao2017,
  author = {Mingfu Shao, Bernard M.E. Moret},
  title = {On Computing Breakpoint Distances for Genomes with Duplicate Genes},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {571--580},
  year = {2017},
  doi = {10.1089/cmb.2016.0149},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 189-203, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {189--203},
  proceedings_doi = {10.1007/978-3-319-31957-5_14}
}

@article{Doerr2017,
  author = {Daniel Doerr, Luis Antonio B. Kowada, Francisco Eloi Soares de Araujo, Shachi Deshpande, Simone Dantas, Bernard M. E. Moret, Jens Stoye},
  title = {New Genome Similarity Measures Based on Conserved Gene Adjacencies},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {6},
  pages = {616--634},
  year = {2017},
  doi = {10.1089/cmb.2017.0065},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 204-224, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {204--224},
  proceedings_doi = {10.1007/978-3-319-31957-5_15}
}

@inproceedings{Tsirogiannis2016,
  author = {Constantinos Tsirogiannis and Brody Sandel},
  title = {Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 225-238, Springer, Cham.},
  pages = {225--238},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5_16},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 225-238, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {225--238},
  proceedings_doi = {10.1007/978-3-319-31957-5_16}
}

@article{Welch2016,
  author = {Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy Purvis, Li Qian, Alexander Hartemink, Jan F. Prins},
  title = {SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data},
  journal = {Genome Biology},
  volume = {17},
  number = {1},
  pages = {106},
  year = {2016},
  doi = {10.1186/s13059-016-0975-3},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 239-240, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {239--240},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 047845},
  preprint_doi = {10.1101/047845}
}

@inproceedings{Zou2016,
  author = {Chenchen Zou, Yuping Zhang, Zhengqing Ouyang},
  title = {Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C Data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 241-241, Springer, Cham.},
  pages = {241--241},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 241-241, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {241--241},
  proceedings_doi = {10.1007/978-3-319-31957-5}
}

@inproceedings{Steuerman2016,
  author = {Yael Steuerman and Irit Gat-Viks},
  title = {Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 242-243, Springer, Cham.},
  pages = {242--243},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 242-243, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {242--243},
  proceedings_doi = {10.1007/978-3-319-31957-5}
}

@article{Sefer2016,
  author = {Emre Sefer, Ziv Bar-Joseph},
  title = {Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments},
  journal = {Cell Systems},
  volume = {3},
  number = {1},
  pages = {35--42},
  year = {2016},
  doi = {10.1016/j.cels.2016.06.007},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 244-245, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {244--245},
  proceedings_doi = {10.1007/978-3-319-31957-5}
}

@article{Simmons2016,
  author = {Sean Simmons, Cenk Sahinalp, Bonnie Berger},
  title = {Enabling Privacy-Preserving GWASs in Heterogeneous Human Populations},
  journal = {Cell Systems},
  volume = {3},
  number = {1},
  pages = {54--61},
  year = {2016},
  doi = {10.1016/j.cels.2016.04.013},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 246-247, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {246--247},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.04484},
  preprint_doi = {10.48550/arXiv.1604.04484}
}

@inproceedings{Hansen2016,
  author = {Tommy Hansen and Fabio Vandin},
  title = {Finding Mutated Subnetworks Associated with Survival in Cancer},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 250-250, Springer, Cham.},
  pages = {250--250},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 250-250, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {250--250},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.02467},
  preprint_doi = {10.48550/arXiv.1604.02467}
}

@article{El-Kebir2016,
  author = {Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael},
  title = {Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures},
  journal = {Cell Systems},
  volume = {3},
  number = {1},
  pages = {43--53},
  year = {2016},
  doi = {10.1016/j.cels.2016.07.004},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 251-251, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {251--251},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.02605},
  preprint_doi = {10.48550/arXiv.1604.02605}
}

@article{Jahn2016,
  author = {Katharina Jahn, Jack Kuipers, Niko Beerenwinkel},
  title = {Tree Inference for Single-Cell Data},
  journal = {Genome Biology},
  volume = {17},
  number = {1},
  pages = {86},
  year = {2016},
  doi = {10.1186/s13059-016-0936-x},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 252-252, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {252--252},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 047795},
  preprint_doi = {10.1101/047795}
}

@inproceedings{Yang2016,
  author = {Yuqing Yang, Ning Chen, Ting Chen},
  title = {mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association Discovery},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 253-254, Springer, Cham.},
  pages = {253--254},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 253-254, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {253--254},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 042630},
  preprint_doi = {10.1101/042630}
}

@article{Luo2018,
  author = {Yunan Luo, Yun William Yu, Jianyang Zeng, Bonnie Berger, Jian Peng},
  title = {Metagenomic binning through low-density hashing},
  journal = {Bioinformatics},
  volume = {35},
  number = {2},
  pages = {219--226},
  year = {2018},
  doi = {10.1093/bioinformatics/bty611},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 255-257, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {255--257},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.02699},
  preprint_doi = {10.48550/arXiv.1604.02699}
}

@article{Nurk2017,
  author = {Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel A Pevzner},
  title = {metaSPAdes: a new versatile metagenomic assembler},
  journal = {Genome Research},
  volume = {27(5) 824-834},
  year = {2017},
  doi = {10.1101/gr.213959.116},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 258-258, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {258--258},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.03071},
  preprint_doi = {10.48550/arXiv.1604.03071}
}

@inproceedings{Singh2016,
  author = {Shashank Singh, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph},
  title = {Distributed Gradient Descent in Bacterial Food Search},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 259-260, Springer, Cham.},
  pages = {259--260},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 259-260, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {259--260},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.03052},
  preprint_doi = {10.48550/arXiv.1604.03052}
}

@inproceedings{Dao2016,
  author = {Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka},
  title = {AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 261-262, Springer, Cham.},
  pages = {261--262},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 261-262, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {261--262},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 047357},
  preprint_doi = {10.1101/047357}
}

@article{Wiedenhoeft2016,
  author = {John Wiedenhoeft, Eric Brugel, Alexander Schliep},
  title = {Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression},
  journal = {PLoS Computational Biology},
  volume = {12},
  number = {5},
  pages = {e1004871},
  year = {2016},
  doi = {10.1371/journal.pcbi.1004871},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 263-263, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {263--263},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 023705},
  preprint_doi = {10.1101/023705}
}

@article{Li2016,
  author = {Yang Li, Shiguo Zhou, David C. Schwartz, Jian Ma},
  title = {Allele-Specific Quantification of Structural Variations in Cancer Genomes},
  journal = {Cell Systems},
  volume = {3},
  number = {1},
  pages = {21--34},
  year = {2016},
  doi = {10.1016/j.cels.2016.05.007},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 264-264, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {264--264},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 048207},
  preprint_doi = {10.1101/048207}
}

@article{Lin2016,
  author = {Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Mark Chaisson, Pavel A. Pevzner},
  title = {Assembly of Long Error-Prone Reads Using de Bruijn Graphs},
  journal = {Proceedings of the National Academy of Sciences},
  volume = {113},
  number = {52},
  pages = {E8396--E8405},
  year = {2016},
  doi = {10.1073/pnas.1604560113},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 265-265, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {265--265},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {bioRxiv 048413},
  preprint_doi = {10.1101/048413}
}

@inproceedings{Gunawan2016,
  author = {Andreas D.M. Gunawan, Bhaskar Das Gupta, Louxin Zhang},
  title = {Locating a Tree in a Reticulation-Visible Network in Cubic Time},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 266-266, Springer, Cham.},
  pages = {266--266},
  year = {2016},
  doi = {10.1007/978-3-319-31957-5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 266-266, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {266--266},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1507.02119},
  preprint_doi = {10.48550/arXiv.1507.02119}
}

@article{Hashemifar2016,
  author = {Somaye Hashemifar, Qixing Huang, Jinbo Xu},
  title = {Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization},
  journal = {Journal of Computational Biology},
  volume = {23},
  number = {11},
  pages = {903--911},
  year = {2016},
  doi = {10.1089/cmb.2016.0025},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 267-269, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {267--269},
  proceedings_doi = {10.1007/978-3-319-31957-5}
}

@article{Ma2017,
  author = {Xiuli Ma, Guangyu Zhou, Jingjing Wang, Jian Peng, Jiawei Han},
  title = {Detection of Complexes in Biological Networks Through Diversified Dense Subgraph Mining},
  journal = {Journal of Computational Biology},
  volume = {24},
  number = {9},
  pages = {923--941},
  year = {2017},
  doi = {10.1089/cmb.2017.0037},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 270-272, Springer, Cham.},
  proceedings_volume = {9649},
  proceedings_pages = {270--272},
  proceedings_doi = {10.1007/978-3-319-31957-5},
  preprint_id = {arXiv:1604.03244},
  preprint_doi = {10.48550/arXiv.1604.03244}
}