@article{Demetci2022,
  author = {Pinar Demetci, Rebecca Santorella, Manav Chakravarthy, Bjorn Sandstede, Ritambhara Singh},
  title = {SCOTv2: Single-Cell Multiomic Alignment with Disproportionate Cell-Type Representation},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {11},
  pages = {1213--1228},
  year = {2022},
  doi = {10.1089/cmb.2022.0270},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 3-19, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {3--19},
  proceedings_doi = {10.1007/978-3-031-04749-7_1},
  preprint_id = {bioRxiv 2021.11.09.467903},
  preprint_doi = {10.1101/2021.11.09.467903}
}

@article{Zhang2022,
  author = {Ran Zhang, Laetitia Meng-papaxanthos, Jean-philippe Vert, William Stafford Noble},
  title = {Multimodal Single-Cell Translation and Alignment with Semi-Supervised Learning},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {11},
  pages = {1198--1212},
  year = {2022},
  doi = {10.1089/cmb.2022.0264},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 20-35, Springer, Cham.},
  proceedings_volume = {13278},
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  proceedings_doi = {10.1007/978-3-031-04749-7_2},
  preprint_id = {bioRxiv 2021.11.18.467517},
  preprint_doi = {10.1101/2021.11.18.467517}
}

@inproceedings{Zhao2022,
  author = {Jingkang Zhao, Vincentius Martin, Raluca Gordan},
  title = {Transcription Factor-Centric Approach to Identify Non-Recurring Putative Regulatory Drivers in Cancer},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 36-51, Springer, Cham.},
  pages = {36--51},
  year = {2022},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 36-51, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {36--51},
  proceedings_doi = {10.1007/978-3-031-04749-7_3},
  preprint_id = {bioRxiv 2022.01.31.478493},
  preprint_doi = {10.1101/2022.01.31.478493}
}

@article{Hoang2022,
  author = {Quang Minh Hoang, Hongyu Zheng, Carl Kingsford},
  title = {Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizer},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1288--1304},
  year = {2022},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 52-69, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {52--69},
  proceedings_doi = {10.1007/978-3-031-04749-7_4},
  preprint_id = {bioRxiv 2022.02.17.480870},
  preprint_doi = {10.1101/2022.02.17.480870}
}

@article{Mallawaarachchi2022,
  author = {Vijini Mallawaarachchi, Yu Lin},
  title = {Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1357--1376},
  year = {2022},
  doi = {10.1089/cmb.2022.0262},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 70-85, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {70--85},
  proceedings_doi = {10.1007/978-3-031-04749-7_5},
  preprint_id = {bioRxiv 2021.09.10.459728},
  preprint_doi = {10.1101/2021.09.10.459728}
}

@inproceedings{Chowdhury2022,
  author = {Agniva Chowdhury, Aritra Bose, Samson Zhou, David P Woodruff, Petros Drineas},
  title = {A Fast, Provably Accurate Approximation Algorithm for Sparse Principal Component Analysis Reveals Human Genetic Variation Across the World},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 86-106, Springer, Cham.},
  pages = {86--106},
  year = {2022},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 86-106, Springer, Cham.},
  proceedings_volume = {13278},
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}

@article{Wang2022,
  author = {Haohan Wang, Oscar Lopez, Eric P. Xing, Wei Wu},
  title = {Kernel Mixed Model for Transcriptome Association Study},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1353--1356},
  year = {2022},
  doi = {10.1089/cmb.2022.0280},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 107-125, Springer, Cham.},
  proceedings_volume = {13278},
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}

@article{Saeedi2022,
  author = {Seyran Saeedi, Myrna Serrano, Dennis G. Yang, J. Paul Brooks, Gregory A. Buck, Tomasz Arodz},
  title = {Group Testing Matrix Design for PCR Screening with Real-Valued Measurements},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1397--1411},
  year = {2022},
  doi = {10.1089/cmb.2022.0413},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 126-142, Springer, Cham.},
  proceedings_volume = {13278},
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}

@article{Hill2022,
  author = {Max Hill, Sebastien Roch},
  title = {Inconsistency of Triplet-Based and Quartet-Based Species Tree Estimation under Intralocus Recombination 8},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {11},
  pages = {1173--1197},
  year = {2022},
  doi = {10.1089/cmb.2022.0265},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 143-158, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {143--158},
  proceedings_doi = {10.1007/978-3-031-04749-7_9},
  preprint_id = {bioRxiv 2021.11.06.467557},
  preprint_doi = {10.1101/2021.11.06.467557}
}

@article{Mahbub2022,
  author = {Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz, M Sohel Rahman, Md Shamsuzzoha Bayzid},
  title = {Quartet Based Gene Tree Imputation Using Deep Learning Improves Phylogenomic Analyses Despite Missing Data},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {11},
  pages = {1156--1172},
  year = {2022},
  doi = {10.1089/cmb.2022.0212},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 159-176, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {159--176},
  proceedings_doi = {10.1007/978-3-031-04749-7_10},
  preprint_id = {bioRxiv 2021.11.03.467204},
  preprint_doi = {10.1101/2021.11.03.467204}
}

@article{Khan2022,
  author = {Shahbaz Khan, Milla Kortelainen, Manuel Caceres, Lucia Williams, Alexandru I Tomescu},
  title = {Improving RNA Assembly via Safety and Completeness in Flow Decompositions},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1270--1287},
  year = {2022},
  doi = {10.1089/cmb.2022.0261},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 177-192, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {177--192},
  proceedings_doi = {10.1007/978-3-031-04749-7_11},
  preprint_id = {arXiv:2201.10372},
  preprint_doi = {10.48550/arXiv.2201.10372}
}

@article{Chitra2022,
  author = {Uthsav Chitra, Tae Yoon Park, Benjamin J. Raphael},
  title = {NetMix2: A Principled Network Propagation Algorithm for Identifying Altered Subnetworks},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1305--1323},
  year = {2022},
  doi = {10.1089/cmb.2022.0336},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 193-208, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {193--208},
  proceedings_doi = {10.1007/978-3-031-04749-7_12},
  preprint_id = {bioRxiv 2022.01.31.478575},
  preprint_doi = {10.1101/2022.01.31.478575}
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@article{Ganjdanesh2022,
  author = {Alireza Ganjdanesh, Jipeng Zhang, Sarah Yan, Wei Chen, Heng Huang},
  title = {Multimodal Genotype and Phenotype Data Integration to Improve Partial Data-Based Longitudinal Prediction},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {12},
  pages = {1324--1345},
  year = {2022},
  doi = {10.1089/cmb.2022.0378},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 209-229, Springer, Cham.},
  proceedings_volume = {13278},
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@article{Dias2022,
  author = {Fernando H C Dias, Lucia Williams, Brendan Mumey, Alexandru I Tomescu},
  title = {Efficient Minimum Flow Decomposition via Integer Linear Programming},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {11},
  pages = {1252--1267},
  year = {2022},
  doi = {10.1089/cmb.2022.0257},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 230-245, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {230--245},
  proceedings_doi = {10.1007/978-3-031-04749-7_14},
  preprint_id = {arXiv:2201.10923},
  preprint_doi = {10.48550/arXiv.2201.10923}
}

@article{Jain2022,
  author = {Chirag Jain, Daniel Gibney, Sharma V Thankachan},
  title = {Algorithms for Colinear Chaining with Overlaps and Gap Costs},
  journal = {Journal of Computational Biology},
  volume = {29},
  number = {11},
  pages = {1237--1251},
  year = {2022},
  doi = {10.1089/cmb.2022.0266},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 246-262, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {246--262},
  proceedings_doi = {10.1007/978-3-031-04749-7_15},
  preprint_id = {bioRxiv 2021.02.03.429492},
  preprint_doi = {10.1101/2021.02.03.429492}
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@article{Gibney2022,
  author = {Daniel Gibney, Sharma V Thankachan, Srinivas Aluru},
  title = {On the hardness of sequence alignment on de Bruijn graphs},
  journal = {Journal of Computational Biology},
  volume = {29},
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  pages = {1377--1396},
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  doi = {10.1089/cmb.2022.0411},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 263-278, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {263--278},
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  preprint_id = {arXiv:2201.12454},
  preprint_doi = {10.48550/arXiv.2201.12454}
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@inproceedings{Xu2022,
  author = {Hanwen Xu, Sheng Wang},
  title = {ProTranslator: zero-shot protein function prediction using textual description},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 279-294, Springer, Cham.},
  pages = {279--294},
  year = {2022},
  doi = {10.1007/978-3-031-04749-7_17},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 279-294, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {279--294},
  proceedings_doi = {10.1007/978-3-031-04749-7_17},
  preprint_id = {arXiv:2204.10286},
  preprint_doi = {10.48550/arXiv.2204.10286}
}

@article{Li2023,
  author = {Chen Li, Maria C. Virgilio, Kathleen L. Collins, Joshua D. Welch},
  title = {Multi-omic single-cell velocity models epigenome-transcriptome interactions and improves cell fate prediction},
  journal = {Nature Biotechnology},
  volume = {41},
  number = {3},
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  year = {2023},
  doi = {10.1038/s41587-022-01476-y},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 297-299, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {297--299},
  proceedings_doi = {10.1007/978-3-031-04749-7_18},
  preprint_id = {bioRxiv 2021.12.13.472472},
  preprint_doi = {10.1101/2021.12.13.472472}
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@article{Zhang2022,
  author = {Ruochi Zhang, Tianming Zhou, Jian Ma},
  title = {Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi},
  journal = {Cell Systems},
  volume = {13},
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  pages = {798--807.e6},
  year = {2022},
  doi = {10.1016/j.cels.2022.09.004},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 300-301, Springer, Cham.},
  proceedings_volume = {13278},
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  proceedings_doi = {10.1007/978-3-031-04749-7_19},
  preprint_id = {bioRxiv 2022.04.18.488683},
  preprint_doi = {10.1101/2022.04.18.488683}
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@article{Hua2024,
  author = {Dunming Hua, Ming Gu, Xiao Zhang, Yanyi Du, Hangcheng Xie, Li Qi, Xiangjun Du, Zhidong Bai, Xiaopeng Zhu, Dechao Tian},
  title = {DiffDomain enables identification of structurally reorganized topologically associating domains},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 302-303, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2022.12.05.519135},
  preprint_doi = {10.1101/2022.12.05.519135}
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@article{Luo2023,
  author = {Xiang Ge Luo, Jack Kuipers, Niko Beerenwinkel},
  title = {Joint inference of repeated evolutionary trajectories and patterns of clonal exclusivity or co-occurrence from tumor mutation trees},
  journal = {Nature Communications},
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  year = {2023},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 304-305, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2021.11.04.467347},
  preprint_doi = {10.1101/2021.11.04.467347}
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@inproceedings{Ivanov2022,
  author = {Pesho Ivanov, Benjamin Bichsel, Martin Vechev},
  title = {Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 306-325, Springer, Cham.},
  pages = {306--325},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 306-325, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2021.11.05.467453},
  preprint_doi = {10.1101/2021.11.05.467453}
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@inproceedings{Zhang2022,
  author = {Pengfei Zhang, Zhengyuan Jiang, Yixuan Wang, Yu Li},
  title = {CLMB: deep contrastive learning for robust metagenomic binning},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 326-348, Springer, Cham.},
  pages = {326--348},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 326-348, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2021.11.15.468566},
  preprint_doi = {10.1101/2021.11.15.468566}
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@article{Li2022,
  author = {Dongshunyi Li, Jun Ding, Ziv Bar-Joseph},
  title = {Unsupervised cell functional annotation for single-cell RNA-seq},
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  volume = {32},
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@article{Qian2022,
  author = {Kun Qian, Shiwei Fu, Hongwei Li, Wei Vivian Li},
  title = {scINSIGHT for interpreting single-cell gene expression from biologically heterogeneous data},
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@inproceedings{Dang2022,
  author = {Meihua Dang, Anji Liu, Xinzhu Wei, Sriram Sankararaman, Guy Van den Broeck},
  title = {Tractable and expressive generative models of genetic variation data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 356-357, Springer, Cham.},
  pages = {356--357},
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@inproceedings{Yang2022,
  author = {Yang Yang, Yuchuan Wang, Yang Zhang, Jian Ma},
  title = {CONCERT: Genome-wide prediction of sequence elements that modulate DNA replication timing},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 358-359, Springer, Cham.},
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@article{Zhang2022,
  author = {Chuanyi Zhang, Palash Sashittal, Michael Xiang, Yichi Zhang, Ayesha Kazi, Mohammed El-Kebir},
  title = {Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses},
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@article{Wetzel2022,
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  title = {Learning probabilistic protein-DNA recognition codes from DNA-binding specificities using structural mappings},
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@article{Rachtman2022,
  author = {Eleonora Rachtman, Shahab Sarmashghi, Vineet Bafna, Siavash Mirarab},
  title = {Uncertainty Quantification Using Subsampling for Assembly-Free Estimates of Genomic Distance and Phylogenetic Relationships},
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@article{Skums2022,
  author = {Pavel Skums, Fatemeh Mohebbi, Vyacheslav Tsyvina, Pelin Icer Baykal, Alina Nemira, Sumathi Ramachandran, Yury Khudyakov},
  title = {SOPHIE: Viral outbreak investigation and transmission history reconstruction in a joint phylogenetic and network theory framework},
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  proceedings_volume = {13278},
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}

@inproceedings{Rahmani2022,
  author = {Elior Rahmani, Michael Jordan, Nir Yosef},
  title = {Identifying systematic variation at the single-cell level by leveraging low-resolution population-level data},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 371-371, Springer, Cham.},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 371-371, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {371--371},
  proceedings_doi = {10.1007/978-3-031-04749-7_32},
  preprint_id = {bioRxiv 2022.01.27.478115},
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}

@article{Ma2022,
  author = {Cong Ma, Uthsav Chitra, Shirley Zhang, Benjamin J Raphael},
  title = {Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics},
  journal = {Cell Systems},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 372-373, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2022.02.05.479261},
  preprint_doi = {10.1101/2022.02.05.479261}
}

@article{Karasikov2022,
  author = {Mikhail Karasikov, Harun Mustafa, Gunnar Ratsch, Andre Kahles},
  title = {Lossless indexing with counting de Bruijn graphs},
  journal = {Genome Research},
  volume = {32},
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  doi = {10.1101/gr.276607.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 374-376, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2021.11.09.467907},
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}

@article{Rahman2022,
  author = {Amatur Rahman, Paul Medvedev},
  title = {Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs},
  journal = {Genome Research},
  volume = {32},
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  doi = {10.1101/gr.276601.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 377-379, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2022.01.20.477068},
  preprint_doi = {10.1101/2022.01.20.477068}
}

@inproceedings{Ferreira2022,
  author = {Pedro F Ferreira, Jack Kuipers, Niko Beerenwinkel},
  title = {Mapping single-cell transcriptomes to copy number evolutionary trees},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 380-381, Springer, Cham.},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 380-381, Springer, Cham.},
  proceedings_volume = {13278},
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@article{Ford2022,
  author = {Michael K. B. Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton L. Dalgard, Stephen Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo,  NIAID COVID Consortium; Uzi Vishkin, Corey T. Watson, S. Cenk Sahinalp},
  title = {ImmunoTyper-SR: A computational approach for genotyping immunoglobulin heavy chain variable genes using short-read data},
  journal = {Cell Systems},
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  pages = {808--816.e5},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 382-384, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2022.01.31.478564},
  preprint_doi = {10.1101/2022.01.31.478564}
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@article{An2023,
  author = {Ulzee An, Ali Pazokitoroudi, Marcus Alvarez, Lianyun Huang, Silviu Bacanu, Andrew J. Schork, Kenneth Kendler, Päivi Pajukanta, Jonathan Flint, Noah Zaitlen, Na Cai, Andy Dahl. Sriram Sankararaman},
  title = {Deep learning-based phenotype imputation on population-scale biobank data increases genetic discoveries},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 385-386, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {385--386},
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  preprint_id = {bioRxiv 2022.08.15.503991},
  preprint_doi = {10.1101/2022.08.15.503991}
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@article{Guerin2022,
  author = {Nathan Guerin, Andreas Feichtner, Eduard Stefan, Teresa Kaserer, Bruce Donald},
  title = {Resistor: An algorithm for predicting resistance mutations via Pareto optimization over multistate protein design and mutational signatures},
  journal = {Cell Systems},
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  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 387-389, Springer, Cham.},
  proceedings_volume = {13278},
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  preprint_id = {bioRxiv 2022.01.18.476733},
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@article{Dai2022,
  author = {Zheng Dai, Sachit D Saksena, Geraldine Horny, Christine Banholzer, Stefan Ewert, David K Gifford},
  title = {Ultra-high-diversity factorizable libraries for efficient therapeutic discovery},
  journal = {Genome Research},
  volume = {32},
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  pages = {1787--1794},
  year = {2022},
  doi = {10.1101/gr.276593.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2022. Lecture Notes in Computer Science, vol 13278, pp 390-392, Springer, Cham.},
  proceedings_volume = {13278},
  proceedings_pages = {390--392},
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  preprint_id = {bioRxiv 2022.01.17.476670},
  preprint_doi = {10.1101/2022.01.17.476670}
}