@inproceedings{Luo2023,
  author = {Runpeng Luo, Yu Lin},
  title = {VStrains: de novo reconstruction of viral strains via iterative path extraction from assembly graphs},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 3-20, Springer, Cham.},
  pages = {3--20},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_1},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 3-20, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {3--20},
  proceedings_doi = {10.1007/978-3-031-29119-7_1},
  preprint_id = {bioRxiv 2022.10.21.513181},
  preprint_doi = {10.1101/2022.10.21.513181}
}

@inproceedings{Fan2023,
  author = {Jason Fan, Jamshed Khan, Giulio Ermanno Pibiri, Robert Patro},
  title = {Spectrum preserving tilings enable sparse and modular reference indexing},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 21-40, Springer, Cham.},
  pages = {21--40},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_2},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 21-40, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {21--40},
  proceedings_doi = {10.1007/978-3-031-29119-7_2},
  preprint_id = {bioRxiv 2022.10.27.513881},
  preprint_doi = {10.1101/2022.10.27.513881}
}

@article{Tabatabaee2023,
  author = {Yasamin Tabatabaee, Sebastien Roch, Tandy Warnow},
  title = {QR-STAR: A Polynomial-Time Statistically Consistent Method for Rooting Species Trees Under the Coalescent},
  journal = {Journal of Computational Biology},
  volume = {30},
  number = {11},
  pages = {1146--1181},
  year = {2023},
  doi = {10.1089/cmb.2023.0185},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 41-57, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {41--57},
  proceedings_doi = {10.1007/978-3-031-29119-7_3},
  preprint_id = {bioRxiv 2022.10.26.513897},
  preprint_doi = {10.1101/2022.10.26.513897}
}

@article{Chandra2023,
  author = {Ghanshyam Chandra, Chirag Jain},
  title = {Gap-Sensitive Colinear Chaining Algorithms for Acyclic Pangenome Graphs},
  journal = {Journal of Computational Biology},
  volume = {30},
  number = {11},
  pages = {1182--1197},
  year = {2023},
  doi = {10.1089/cmb.2023.0186},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 58-73, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {58--73},
  proceedings_doi = {10.1007/978-3-031-29119-7_4},
  preprint_id = {bioRxiv 2022.08.29.505691},
  preprint_doi = {10.1101/2022.08.29.505691}
}

@inproceedings{Zhou2023,
  author = {Xiaogen Zhou, Zhiqiang Li, Tong Tong},
  title = {DM-Net: a dual-model network for automated biomedical image diagnosis},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 74-84, Springer, Cham.},
  pages = {74--84},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_5},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 74-84, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {74--84},
  proceedings_doi = {10.1007/978-3-031-29119-7_5}
}

@inproceedings{Du2023,
  author = {Bing-Xue Du, Yi Xu, Siu Ming Yiu, Hui Yu, Jian-Yu Shi},
  title = {MTGL-ADMET: A Novel Multi-Task Graph Learning Framework for ADMET Prediction Enhanced by Status-Theory and Maximum Flow},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 85-103, Springer, Cham.},
  pages = {85--103},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_6},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 85-103, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {85--103},
  proceedings_doi = {10.1007/978-3-031-29119-7_6}
}

@inproceedings{Mallick2023,
  author = {Shikha Mallick, Sahely Bhadra},
  title = {CDGCN: Conditional de novo Drug generative model using Graph Convolution Networks},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 104-119, Springer, Cham.},
  pages = {104--119},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_7},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 104-119, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {104--119},
  proceedings_doi = {10.1007/978-3-031-29119-7_7}
}

@inproceedings{Mourragui2023,
  author = {Soufiane Mourragui, Marco Loog, Mirrelijn van Nee, Mark van de Wiel, Marcel Reinders, Lodewyk Wessels},
  title = {Percolate: an exponential family JIVE model to design DNA-based predictors of drug response},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 120-138, Springer, Cham.},
  pages = {120--138},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_8},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 120-138, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {120--138},
  proceedings_doi = {10.1007/978-3-031-29119-7_8},
  preprint_id = {bioRxiv 2022.09.11.507473},
  preprint_doi = {10.1101/2022.09.11.507473}
}

@inproceedings{Zheng2023,
  author = {Weizhong Zheng, John H.C. Fong, Yuk Kei Wan, Athena H.Y. Chu, Yuanhua Huang, Alan S.L. Wong, Joshua Ho},
  title = {Translation rate prediction and regulatory motif discovery with multi-task learning},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 139-154, Springer, Cham.},
  pages = {139--154},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_9},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 139-154, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {139--154},
  proceedings_doi = {10.1007/978-3-031-29119-7_9},
  preprint_id = {bioRxiv 2022.05.03.490410},
  preprint_doi = {10.1101/2022.05.03.490410}
}

@article{Krieger2023,
  author = {Spencer Krieger, John Kececioglu},
  title = {Shortest Hyperpaths in Directed Hypergraphs for Reaction Pathway Inference},
  journal = {Journal of Computational Biology},
  volume = {30},
  number = {11},
  pages = {1198--1225},
  year = {2023},
  doi = {10.1089/cmb.2023.0242},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 155-173, Springer, Cham.},
  proceedings_volume = {13976},
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  proceedings_doi = {10.1007/978-3-031-29119-7_10}
}

@inproceedings{Chen2023,
  author = {Ziqi Chen, Martin Min, Hongyu Guo, Chao Cheng, Trevor Clancy, Xia Ning},
  title = {T-Cell Receptor Optimization with Reinforcement Learning and Mutation Polices for Precision Immunotherapy},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 174-192, Springer, Cham.},
  pages = {174--192},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7_11},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 174-192, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {174--192},
  proceedings_doi = {10.1007/978-3-031-29119-7_11},
  preprint_id = {arXiv:2303.02162},
  preprint_doi = {10.48550/arXiv.2303.02162}
}

@article{Han2023,
  author = {Yunheng Han, Erin K. Molloy},
  title = {Improving quartet graph construction for scalable and accurate species tree estimation from gene trees},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1042--1052},
  year = {2023},
  doi = {10.1101/gr.277629.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 195-196, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {195--196},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.06.25.497608},
  preprint_doi = {10.1101/2022.06.25.497608}
}

@article{Ekim2023,
  author = {Baris Ekim, Kristoffer Sahlin, Paul Medvedev, Bonnie Berger, Rayan Chikhi},
  title = {Efficient mapping of accurate long reads in minimizer space with mapquik},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1188--1197},
  year = {2023},
  doi = {10.1101/gr.277679.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 197-199, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {197--199},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.12.23.521809},
  preprint_doi = {10.1101/2022.12.23.521809}
}

@article{Hera2023,
  author = {Mahmudur Rahman Hera, N. Tessa Pierce-Ward, David Koslicki},
  title = {Deriving confidence intervals for mutation rates across a wide range of evolutionary distances using FracMinHash},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1061--1068},
  year = {2023},
  doi = {10.1101/gr.277651.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 200-202, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {200--202},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.01.11.475870},
  preprint_doi = {10.1101/2022.01.11.475870}
}

@article{Maier2023,
  author = {Benjamin Dominik Maier, Kristoffer Sahlin},
  title = {Entropy predicts sensitivity of pseudorandom seeds},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1162--1174},
  year = {2023},
  doi = {10.1101/gr.277645.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 203-204, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {203--204},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.13.512198},
  preprint_doi = {10.1101/2022.10.13.512198}
}

@article{Shaw2023,
  author = {Jim Shaw, Yun William Yu},
  title = {Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1175--1187},
  year = {2023},
  doi = {10.1101/gr.277637.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 205-207, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {205--207},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.14.512303},
  preprint_doi = {10.1101/2022.10.14.512303}
}

@article{Cracco2023,
  author = {Andrea Cracco, Alexandru I. Tomescu},
  title = {Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1198--1207},
  year = {2023},
  doi = {10.1101/gr.277615.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 208-209, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {208--209},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.24.513174},
  preprint_doi = {10.1101/2022.10.24.513174}
}

@article{Liu2023,
  author = {Xinhao Liu, Ron Zeira, Benjamin J. Raphael},
  title = {Partial alignment of multislice spatially resolved transcriptomics data},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1124--1132},
  year = {2023},
  doi = {10.1101/gr.277670.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 210-211, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {210--211},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2023.01.08.523162},
  preprint_doi = {10.1101/2023.01.08.523162}
}

@article{Naseri2023,
  author = {Ardalan Naseri, William Yue, Shaojie Zhang, Degui Zhi},
  title = {Fast inference of genetic recombination rates in biobank scale data},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1015--1022},
  year = {2023},
  doi = {10.1101/gr.277676.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 212-213, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {212--213},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2023.01.09.523304},
  preprint_doi = {10.1101/2023.01.09.523304}
}

@article{Ahmed2023,
  author = {Omar Ahmed, Massimiliano Rossi, Christina Boucher, Ben Langmead},
  title = {Efficient taxa identification using a pangenome index},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1069--1077},
  year = {2023},
  doi = {10.1101/gr.277642.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 214-216, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {214--216},
  proceedings_doi = {10.1007/978-3-031-29119-7}
}

@article{McWhite2023,
  author = {Claire McWhite, Isabel Armour-Garb, Mona Singh},
  title = {Leveraging protein language models for accurate multiple sequence alignments},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1145--1153},
  year = {2023},
  doi = {10.1101/gr.277675.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 217-218, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {217--218},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.21.513099},
  preprint_doi = {10.1101/2022.10.21.513099}
}

@article{Liu2023,
  author = {Yuelin Liu, Xuan Cindy Li, Farid Rashidi Mehrabadi, Alejandro A. Schäffer, Drew Pratt, David R. Crawford, Salem Malikic, Erin K. Molloy, Vishaka Gopalan, Stephen M. Mount, Eytan Ruppin, Kenneth Aldape, S. Cenk Sahinalp},
  title = {Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1089--1100},
  year = {2023},
  doi = {10.1101/gr.277608.122},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 219-221, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {219--221},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2021.03.22.436475},
  preprint_doi = {10.1101/2021.03.22.436475}
}

@article{Zhang2022,
  author = {Chihao Zhang, Yiling Elaine Chen, Shihua Zhang, Jingyi Jessica Li},
  title = {Information-theoretic Classification Accuracy: A Criterion that Guides Data-driven Combination of Ambiguous Outcome Labels in Multi-class Classification},
  journal = {Journal of Machine Learning Research},
  volume = {23},
  number = {341},
  pages = {1--65},
  year = {2022},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 222-223, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {222--223},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {arXiv:2109.00582},
  preprint_doi = {10.48550/arXiv.2109.00582}
}

@article{Pellow2023,
  author = {David Pellow, Lianrong Pu, Baris Ekim, Lior Kotlar, Bonnie Berger, Ron Shamir, Yaron Orenstein},
  title = {Efficient minimizer orders for large values of k using minimum decycling sets},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1154--1161},
  year = {2023},
  doi = {10.1101/gr.277644.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 224-226, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {224--226},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.18.512682},
  preprint_doi = {10.1101/2022.10.18.512682}
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@article{Baker2023,
  author = {Daniel N. Baker, Ben Langmead},
  title = {Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1218--1227},
  year = {2023},
  doi = {10.1101/gr.277655.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 227-228, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {227--228},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.16.512384},
  preprint_doi = {10.1101/2022.10.16.512384}
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@article{Sashittal2023,
  author = {Palash Sashittal, Henri Schmidt, Michelle Chan, Benjamin J. Raphael},
  title = {Startle: A star homoplasy approach for CRISPR-Cas9 lineage tracing},
  journal = {Cell Systems},
  volume = {14},
  number = {12},
  pages = {1113--1121.e9},
  year = {2023},
  doi = {10.1016/j.cels.2023.11.005},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 229, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {229},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.12.18.520935},
  preprint_doi = {10.1101/2022.12.18.520935}
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@article{Zhang2023,
  author = {Louxin Zhang, Niloufar Abhari, Caroline Colijn, Yufeng Wu},
  title = {A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1053--1060},
  year = {2023},
  doi = {10.1101/gr.277669.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 230-232, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {230--232},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {arXiv:2301.00992},
  preprint_doi = {10.48550/arXiv.2301.00992}
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@article{Joudaki2023,
  author = {Amir Joudaki, Alexandru Meterez, Harun Mustafa, Ragnar Groot Koerkamp, André Kahles, Gunnar Rätsch},
  title = {Aligning distant sequences to graphs using long seed sketches},
  journal = {Genome Research},
  volume = {33},
  number = {7},
  pages = {1208--1217},
  year = {2023},
  doi = {10.1101/gr.277659.123},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 233-235, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {233--235},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.26.513890},
  preprint_doi = {10.1101/2022.10.26.513890}
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@article{Mai2024,
  author = {Uyen Mai, Eduardo Charvel, Siavash Mirarab},
  title = {Expectation-Maximization enables Phylogenetic Dating under a Categorical Rate Model},
  journal = {Systematic Biology},
  volume = {73},
  number = {5},
  pages = {823--838},
  year = {2024},
  doi = {10.1093/sysbio/syae034},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 236-238, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {236--238},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2022.10.06.511147},
  preprint_doi = {10.1101/2022.10.06.511147}
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@inproceedings{Gorla2023,
  author = {Aditya Gorla, Sriram Sankararaman, Esteban Burchard, Jonathan Flint, Noah Zaitlen, Elior Rahmani},
  title = {Phenotypic subtyping via contrastive learning},
  booktitle = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 239-240, Springer, Cham.},
  pages = {239--240},
  year = {2023},
  doi = {10.1007/978-3-031-29119-7},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 239-240, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {239--240},
  proceedings_doi = {10.1007/978-3-031-29119-7},
  preprint_id = {bioRxiv 2023.01.05.522921},
  preprint_doi = {10.1101/2023.01.05.522921}
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@article{Schulte2023,
  author = {Sara C. Schulte, Alexander Dilthey, Gunnar W. Klau},
  title = {HOGVAX: Exploiting epitope overlaps to maximize population coverage in vaccine design with application to SARS-CoV-2},
  journal = {Cell Systems},
  volume = {14},
  number = {12},
  pages = {1122--1130},
  year = {2023},
  doi = {10.1016/j.cels.2023.11.001},
  proceedings_name = {Research in Computational Molecular Biology. RECOMB 2023. Lecture Notes in Computer Science, vol 13976, pp 241-243, Springer, Cham.},
  proceedings_volume = {13976},
  proceedings_pages = {241--243},
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@article{Schweiger2023,
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@article{LaPierre2023,
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@article{Sanaullah2023,
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@article{Chen2023,
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@article{Vu2023,
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@article{Singh2024,
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  title = {Causal gene regulatory analysis with RNA velocity reveals an interplay between slow and fast transcription factors},
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@article{Stebliankin2023,
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@article{Özçelik2023,
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@inproceedings{Hu2023,
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@article{Xu2025,
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@article{Ivanovic2023,
  author = {Stefan Ivanovic, Mohammed El-Kebir},
  title = {Modeling and predicting cancer clonal evolution with reinforcement learning},
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@article{Venkatesaramani2023,
  author = {Rajagopal Venkatesaramani, Zhiyu Wan, Brad Malin, Yevgeniy Vorobeychik},
  title = {Enabling tradeoffs in privacy and utility in genomic data Beacons and summary statistics},
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@article{Sadhuka2023,
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  title = {Assessing transcriptomic reidentification risks using discriminative sequence models},
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  volume = {33},
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