@inproceedings{Dai2026,
  author = {Junyan Dai, Yunheng Han, Erin Molloy},
  title = {Quartet-based species tree methods enable fast and consistent tree of blobs reconstruction under the network multispecies coalescent},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.05.686850},
  preprint_doi = {10.1101/2025.11.05.686850}
}

@inproceedings{Sena2026,
  author = {Francisco Sena and Alexandru I. Tomescu},
  title = {Fast and Flexible Flow Decompositions in General Graphs via Dominators},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {arXiv:2511.19153},
  preprint_doi = {10.48550/arXiv.2511.19153}
}

@inproceedings{Stewart2026,
  author = {Ross Stewart, Florent Laval, Michael Calderwood, Matthew Mort, David Cooper, Marc Vidal, Predrag Radivojac},
  title = {Predicting interaction-specific protein–protein interaction perturbations by missense variants with MutPred-PPI},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.12.20.695738},
  preprint_doi = {10.64898/2025.12.20.695738}
}

@inproceedings{Borowiak2026,
  author = {Molly Borowiak and Yun William Yu},
  title = {KuPID: Kmer-based Upstream Preprocessing of Long Reads for Isoform Discovery},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.12.05.692400},
  preprint_doi = {10.64898/2025.12.05.692400}
}

@inproceedings{Nikitin2026,
  author = {Kirill Nikitin and Gamze Gursoy},
  title = {Private Information Leakage from Polygenic Risk Scores},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.16.706191},
  preprint_doi = {10.64898/2026.02.16.706191}
}

@inproceedings{Blindenbach2026,
  author = {Jacob Blindenbach, Shaunak Soni, Gamze Gursoy},
  title = {Privacy-Preserving Pangenome Graphs},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.16.706152},
  preprint_doi = {10.64898/2026.02.16.706152}
}

@inproceedings{Kong2026,
  author = {Zitai Kong, Yiheng Zhu, Yinlong Xu, Mingze Yin, Tingjun Hou, Jian Wu, Hongxia Xu, Chang-Yu Hsieh},
  title = {ProtFlow: Flow Matching-based Protein Sequence Design with Comprehensive Protein Semantic Distribution Learning and High-quality Generation},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.14.705870},
  preprint_doi = {10.64898/2026.02.14.705870}
}

@inproceedings{Käufler2026,
  author = {Sara C. Käufler, Henri Schmidt, Martin Jürgens, Gunnar W. Klau, Palash Sashittal, Benjamin J. Raphael},
  title = {POTTR: Identifying Recurrent Trajectories in Evolutionary and Developmental Processes using Posets},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.707960},
  preprint_doi = {10.64898/2026.02.25.707960}
}

@inproceedings{Zhang2026,
  author = {Peidong Zhang, Rong Han, Xiangzhe Kong, Ting Chen, Jianzhu Ma},
  title = {SpecLig: Energy-Guided Hierarchical Model for Target-Specific 3D Ligand Design},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.06.687093},
  preprint_doi = {10.1101/2025.11.06.687093}
}

@inproceedings{Saha2026,
  author = {Anik Saha and Md Shamsuzzoha Bayzid},
  title = {STELAR-X: Scaling Coalescent-Based Species Tree Inference to 100,000 Species and Beyond},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.22.689894},
  preprint_doi = {10.1101/2025.11.22.689894}
}

@inproceedings{Chowdhury2026,
  author = {Md Zarzees Uddin Shah Chowdhury, T. M. Murali, Palash Sashittal},
  title = {A Cophylogenetic Approach for Virus-Host Interaction Prediction},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.26.708038},
  preprint_doi = {10.64898/2026.02.26.708038}
}

@inproceedings{Chardès2026,
  author = {Victor Chardès},
  title = {Denoising single-cell transcriptomic data with sparse PCA},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {arXiv:2509.15429},
  preprint_doi = {10.48550/arXiv.2509.15429}
}

@inproceedings{Di2026,
  author = {Yazheng Di and Na Cai},
  title = {Prediction of lifetime disease liability from EHR features},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {medRxiv 2026.02.15.26346336},
  preprint_doi = {10.64898/medRxiv 2026.02.15.26346336}
}

@inproceedings{Salamatov2026,
  author = {Azamat Salamatov and Gowtham Atluri},
  title = {Quantum and Temporal Graph Neural Networks Reveal New Accuracy Limits in Predicting Protein–Ligand Dissociation Kinetics},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.20.689635},
  preprint_doi = {10.1101/2025.11.20.689635}
}

@inproceedings{Hera2026,
  author = {Mahmudur Rahman Hera, David Koslicki, Conrado Martínez},
  title = {MaxGeomHash: An Algorithm for Variable-Size Random Sampling of Distinct Elements},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.11.687920},
  preprint_doi = {10.1101/2025.11.11.687920}
}

@inproceedings{Mohanty2026,
  author = {Vaibhav Mohanty, Anna Sappington, Eugene Shakhnovich, Bonnie Berger},
  title = {Evolutionary dynamics under phenotypic uncertainty},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.15.711953},
  preprint_doi = {10.64898/2026.03.15.711953}
}

@inproceedings{Arasti2026,
  author = {Shayesteh Arasti, Ali Osman Berk Şapcı, Eleonora Rachtman, Mohammed El-Kebir, Siavash Mirarab},
  title = {Deconvolving Phylogenetic Distance Mixtures},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.01.18.700179},
  preprint_doi = {10.64898/2026.01.18.700179}
}

@inproceedings{Sun2026,
  author = {Pengyu Sun, Xinlei Huang, Tian Mou, Xubin Zheng},
  title = {Achieving spatial multi-omics integration from unaligned serial sections with DIME},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.707961},
  preprint_doi = {10.64898/2026.02.25.707961}
}

@inproceedings{Tu2026,
  author = {Xinming Tu, Alexander Sasse, Kaitavjeet Chowdhary, Anna E. Spiro, Liang Yang, Maria Chikina, Christophe O. Benoist, Sara Mostafavi},
  title = {Deep genomic models of allele-specific measurements},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.04.09.648060},
  preprint_doi = {10.1101/2025.04.09.648060}
}

@inproceedings{Bohnenkämper2026,
  author = {Leonard Bohnenkämper, Luca Parmigiani, Cedric Chauve, Jens Stoye},
  title = {On Deriving Synteny Blocks by Compacting Elements},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.12.15.694404},
  preprint_doi = {10.64898/2025.12.15.694404}
}

@inproceedings{Holtgrefe2026,
  author = {Niels Holtgrefe, Leo van Iersel, Ruben Meuwese, Yukihiro Murakami, Jannik Schestag},
  title = {PaNDA: Efficient Optimization of Phylogenetic Diversity in Networks},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.14.688467},
  preprint_doi = {10.1101/2025.11.14.688467}
}

@inproceedings{Cai2026,
  author = {Jinpu Cai, Yuxuan Wang, Yunhao Qiao, Cheng Wang, Ziqi Rong, Luting Zhou, Haoyang Liu, Meng Jiang, Hongbin Shen, Jingyi Jessica Li, Hongyi Xin},
  title = {Information Geometry Reconciles Discrete and Continuous Variation in Single-Cell and Spatial Transcriptomic Analysis},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.707866},
  preprint_doi = {10.64898/2026.02.25.707866}
}

@inproceedings{Muzio2026,
  author = {Giulia Muzio, Michael Adamer, Leyden Fernandez, Lukas Miklautz, Karsten Borgwardt, Kemal Avican},
  title = {Bacterial protein function prediction via multimodal deep learning},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2024.10.30.621035},
  preprint_doi = {10.1101/2024.10.30.621035}
}

@inproceedings{Hoffmann2026,
  author = {Juliane Hoffmann, Julia Wallnig, Ziheng Dai, Olga Tsoy, David B. Blumenthal, Anne Hartebrodt},
  title = {Alternet: Alternative splicing-aware gene regulatory network inference},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.21.689745},
  preprint_doi = {10.1101/2025.11.21.689745}
}

@inproceedings{Yelmen2026,
  author = {Burak Yelmen, Merve Nur Güler, Tõnu Kollo, Märt Möls, Guillaume Charpiat, Flora Jay},
  title = {Bias in genome-wide association test statistics due to omitted interactions},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.21.689603},
  preprint_doi = {10.1101/2025.11.21.689603}
}

@inproceedings{Zhang2026,
  author = {Xiaoge Zhang, Zhengyu Fang, Kaiyu Tang, Huiyuan Chen, Jing Li},
  title = {Joint Learning of Drug-Drug Combination and Drug-Drug Interaction via Coupled Tensor-Tensor Factorization with Side Information},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.13.705792},
  preprint_doi = {10.64898/2026.02.13.705792}
}

@inproceedings{Magalhães2026,
  author = {Hugo Magalhães, Jonas Weber, Gunnar W. Klau, Tobias Marschall, Timofey Prodanov},
  title = {Sequence-to-graph alignment based copy number calling using a network flow formulation},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.21.689771},
  preprint_doi = {10.1101/2025.11.21.689771}
}

@inproceedings{Hoang2026,
  author = {Minh Hoang, Isabel Armour-Garb, Mona Singh},
  title = {Fast, accurate construction of multiple sequence alignments from protein language embeddings},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.01.02.697423},
  preprint_doi = {10.64898/2026.01.02.697423}
}

@inproceedings{Naseri2026,
  author = {Ardalan Naseri, Ahsan Sanaullah, Shaojie Zhang, Degui Zhi},
  title = {SLAB: A Sweep Line Algorithm in PBWT for Finding Haplotype Block Cores},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.16.712201},
  preprint_doi = {10.64898/2026.03.16.712201}
}

@inproceedings{Ingels2026,
  author = {Florian Ingels, Lea Vandamme, Mathilde Girard, Clément Agret, Bastien Cazaux, Antoine Limasset},
  title = {Compressed inverted indexes for scalable sequence similarity},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.21.689685},
  preprint_doi = {10.1101/2025.11.21.689685}
}

@inproceedings{Ingels2026,
  author = {Florian Ingels, Lucas Robidou, Igor Martayan, Camille Marchet, Antoine Limasset},
  title = {Minimizer Density revisited: Models and Multiminimizers},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.21.689688},
  preprint_doi = {10.1101/2025.11.21.689688}
}

@inproceedings{Li2026,
  author = {Ruiqi Li, Junchen Yang, Pei-Chun Su, Ariel Jaffe, Ofir Lindenbaum, Yuval Kluger},
  title = {DiCoLo: Integration-free and cluster-free detection of localized differential gene co-expression in single-cell data},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.23.689932},
  preprint_doi = {10.1101/2025.11.23.689932}
}

@inproceedings{Doughty2026,
  author = {Ryan Doughty, Michael Tisza, Todd Treangen},
  title = {bronko: ultrarapid, alignment-free detection of viral genome variation},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.12.01.691650},
  preprint_doi = {10.64898/2025.12.01.691650}
}

@inproceedings{Weber2026,
  author = {Leah Weber, Chi Yin Ching, Chrisopher Ly, Yixiao Cheng, Chunxu Gao, Peter Van Loo},
  title = {Arborist: Prioritizing Bulk DNA Inferred Tumor Phylogenies via Low-pass Single-cell DNA Sequencing Data},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.26.707773},
  preprint_doi = {10.64898/2026.02.26.707773}
}

@inproceedings{Sun2026,
  author = {Zhongxuan Sun, Hyunseung Kang, Sunduz Keles},
  title = {Causal gene regulatory network inference from Perturb-seq via adaptive instrumental variable modeling},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.18.706642},
  preprint_doi = {10.64898/2026.02.18.706642}
}

@inproceedings{Gu2026,
  author = {Xinyu Gu, Stefan Ivanovic, Daniel Feng, Mohammed El-Kebir},
  title = {Summarizing RNA Structural Ensembles via Maximum Agreement Secondary Structures},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.708069},
  preprint_doi = {10.64898/2026.02.25.708069}
}

@inproceedings{Li2026,
  author = {Danrong Li, Young Kun Ko, Stefan Canzar},
  title = {CAMP: Coreset Accelerated Metacell Partitioning enables scalable analysis of single-cell data},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.12.11.693725},
  preprint_doi = {10.64898/2025.12.11.693725}
}

@inproceedings{Aggarwal2026,
  author = {Anusha Aggarwal, Ksenia Sokolova, Olga Troyanskaya},
  title = {Multi-modal tissue-aware graph neural network for in silico genetic discovery},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.17.706433},
  preprint_doi = {10.64898/2026.02.17.706433}
}

@inproceedings{Talukder2026,
  author = {Arghamitra Talukder, Nicholas Keung, Itsik Pe'Er, David A. Knowles},
  title = {CLADES — Contrastive Learning Augmented DifferEntial Splicing with Orthologous Positive Pairs},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.20.707118},
  preprint_doi = {10.64898/2026.02.20.707118}
}

@inproceedings{Lu2026,
  author = {Chang Lu, Yuval Kluger, Rong Ma},
  title = {MOSAIC: A Spectral Framework for Integrative Phenotypic Characterization Using Population-Level Single-Cell Multi-Omics},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.10.705077},
  preprint_doi = {10.64898/2026.02.10.705077}
}

@inproceedings{Nandi2026,
  author = {Anupama Nandi, Seth Neel, Hyunghoon Cho},
  title = {GOPHER: Optimization-based Phenotype Randomization for Genome-Wide Association Studies with Differential Privacy},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {arXiv:2512.04225},
  preprint_doi = {10.48550/arXiv.2512.04225}
}

@inproceedings{Wu2026,
  author = {Chih Hao Wu, Jacob Gilbert, Salem Malikić, S. Cenk Sahinalp},
  title = {Identifying Robust Subclonal Structures Through Tumor Progression Tree Alignment},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.708046},
  preprint_doi = {10.64898/2026.02.25.708046}
}

@inproceedings{Karpurapu2026,
  author = {Anish Karpurapu, Charles Gersbach, Rohit Singh},
  title = {DeltaNMF: A Two-Stage Neural NMF for Differential Gene Program Discovery},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.01.22.701049},
  preprint_doi = {10.64898/2026.01.22.701049}
}

@inproceedings{Pratapa2026,
  author = {Aditya Pratapa, Rohit Singh, Purushothama Rao Tata},
  title = {Transforming Biological Foundation Model Representations for Out-of-Distribution Data},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.20.689462},
  preprint_doi = {10.1101/2025.11.20.689462}
}

@inproceedings{Liu2026,
  author = {Zhengtong Liu, Arush Ramteke, Aakarsh Anand, Aditya Gorla, Moonseong Jeong, Sriram Sankararaman},
  title = {A biobank-scale method for learning environmental modulators of gene–environment interaction underlying complex traits},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.13.711725},
  preprint_doi = {10.64898/2026.03.13.711725}
}

@inproceedings{Pan2026,
  author = {Xinhai Pan, Yiru Chen, Xiuwei Zhang},
  title = {Integrative Inference of Spatially Informed Cell Lineage Trees using LineageMap},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.01.19.700383},
  preprint_doi = {10.64898/2026.01.19.700383}
}

@inproceedings{Hua2026,
  author = {Kailey Hua, Ellie Haber, Jian Ma},
  title = {Uncertainty-aware synthetic lethality prediction with pretrained foundation models},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.708096},
  preprint_doi = {10.64898/2026.02.25.708096}
}

@inproceedings{Dai2026,
  author = {Shitong Dai, Jiaqi Luo, Yunan Luo},
  title = {Evolutionary profile enhancement improves protein function annotation},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.03.709280},
  preprint_doi = {10.64898/2026.03.03.709280}
}

@inproceedings{Khan2026,
  author = {Jamshed Khan, Laxman Dhulipala, Prashant Pandey, Rob Patro},
  title = {Faster and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.02.02.636161},
  preprint_doi = {10.1101/2025.02.02.636161}
}

@inproceedings{Jiang2026,
  author = {Chenxin Flora Jiang, Changhu Wang, Jingyi Jessica Li},
  title = {Nullstrap-DE: A General Framework for Calibrating FDR and Preserving Power in Differential Expression Methods, with Applications to DESeq2 and edgeR},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {arXiv:2507.20598},
  preprint_doi = {10.48550/arXiv.2507.20598}
}

@inproceedings{Yang2026,
  author = {Luqi Yang, Zhenwei Huang, Jinpu Cai, Hongyi Xin},
  title = {Gene-First Identity Construction for Robust Cell Identification in Single-Cell Transcriptomics},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.25.707869},
  preprint_doi = {10.64898/2026.02.25.707869}
}

@inproceedings{Dong2026,
  author = {Chris Dong, Yihui Cen, Dongyuan Song, Jingyi Jessica Li},
  title = {scDesignPop generates population-scale single-cell RNA-seq data for power analysis, method benchmarking, and privacy protection},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.23.707578},
  preprint_doi = {10.64898/2026.02.23.707578}
}

@inproceedings{Zentgraf2026,
  author = {Jens Zentgraf, Johanna Schmitz, Andreas Keller, Sven Rahmann},
  title = {Error Correction Algorithms for Efficient Gene Quantification in Single Cell Transcriptomics},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.27.690682},
  preprint_doi = {10.1101/2025.11.27.690682}
}

@inproceedings{Zhao2026,
  author = {Wenjun Zhao, Elana Fertig, Genevieve Stein-O'Brien},
  title = {CycleGRN: Inferring Gene Regulatory Networks from Cyclic Flow Dynamics in Single-Cell RNA-seq},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.12.688126},
  preprint_doi = {10.1101/2025.11.12.688126}
}

@inproceedings{Madduri2026,
  author = {Adithya Madduri, Randall Ellis, Chirag Patel},
  title = {Protein Compositional Ratio Representation (PCRR) Systematically Improves Human Disease Prediction},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.29.691286},
  preprint_doi = {10.1101/2025.11.29.691286}
}

@inproceedings{Lazarev2026,
  author = {Daniel Lazarev, Anna Sappington, Grant Chau, Ruochi Zhang, Bonnie Berger},
  title = {Constrained diffusion as a paradigm for evolution},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.10.710948},
  preprint_doi = {10.64898/2026.03.10.710948}
}

@inproceedings{Li2026,
  author = {Jiayi Li, Yanruisheng Shao, Yu Li, Qinze Yu},
  title = {Integrative Multi‑Scale Sequence–Structure Modeling for Antimicrobial Peptide Prediction and Design},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.24.707610},
  preprint_doi = {10.64898/2026.02.24.707610}
}

@inproceedings{Du2026,
  author = {Jinqiu Du, Kevin Z. Lin},
  title = {Integrating morphology and gene expression in unpaired single-cell data using GeoAdvAE},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.19.689368},
  preprint_doi = {10.1101/2025.11.19.689368}
}

@inproceedings{Ding2026,
  author = {Kerr Ding, Ziang Li, Tony Tu, Jiaqi Luo, Yunan Luo},
  title = {Deconvolving mutation effects on protein stability and function with disentangled protein language models},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.03.703560},
  preprint_doi = {10.64898/2026.02.03.703560}
}

@inproceedings{Faizrahnemoon2026,
  author = {Mahsa Faizrahnemoon, Jens Luebeck, King L. Hung, Suhas Rao, Matthew G. Jones, Paul S. Mischel, Howard Y. Chang, Kaiyuan Zhu, Vineet Bafna},
  title = {Fast and accurate resolution of ecDNA sequence using Cycle-Extractor},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.10.710955},
  preprint_doi = {10.64898/2026.03.10.710955}
}

@inproceedings{Hosseini2026,
  author = {Marjan Hosseini, Ella Veiner, Thomas Bergendahl, Tala Yasenpoor, Zane Smith, Margaret Staton, Derek Aguiar},
  title = {pHapCompass: Probabilistic Assembly and Uncertainty Quantification of Polyploid Haplotype Phase},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {arXiv:2512.04393},
  preprint_doi = {10.48550/arXiv.2512.04393}
}

@inproceedings{Coşkun2026,
  author = {Mustafa Coşkun, Filipa Blasco Lopes, Pınar Kubilay Tolunay, Mark R. Chance, Mehmet Koyutürk},
  title = {scProfiterole: Clustering of Single-Cell Proteomic Data Using Graph Contrastive Learning via Spectral Filters},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.02.26.708196},
  preprint_doi = {10.64898/2026.02.26.708196}
}

@inproceedings{Tule2026,
  author = {Sanjana Tule, Samuel Davis, Ivan Koludarov, Ariane Mora, Mikael Boden},
  title = {Generating Hybrid Proteins with the MSA-Transformer},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2025.11.20.689447},
  preprint_doi = {10.1101/2025.11.20.689447}
}

@inproceedings{Sheng2026,
  author = {Xiaoqi Sheng, Jiawen Liu, Jiaming Liang, Yiheng Zhang, Sankar Mondal, Yutong Li, Tinghe Zhang, Bing Liu, Jiangning Song, Hongmin Cai},
  title = {Modeling Multi-Modal Brain Connectomes for Brain Disorder Diagnosis via Graph Diffusion Optimal Transport Network},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.05.709693},
  preprint_doi = {10.64898/2026.03.05.709693}
}

@inproceedings{Liu2026,
  author = {Xinhao Liu, Hongyu Zheng, Peter Halmos, Julian Gold, Erik Storrs, Li Ding, Ben Raphael},
  title = {Multimodal spatial alignment and morphology mapping with MOSAICField},
  year = {2026},
  proceedings_volume = {0},
  preprint_id = {bioRxiv 2026.03.10.710931},
  preprint_doi = {10.64898/2026.03.10.710931}
}