{ "title": "3rd Annual International Conference on Research in Computational Molecular Biology", "location": "Lyon, France", "dates": "April 11 - 14, 1999", "pc_chair": "Sorin Istrail", "organization_committee": "Mireille Regnier (chair), Florence Balax, Daniel Kahn, Gregory Kucherov, Sophie Schbath, Annick Theis-Viémont", "keynotes": "Peer Bork, Cyrus Chothia, Daniel Cohen, John Moult, Gene Myers, Piotr Slonimski, E. M. Southern, Peter Willett, John Woole", "website": "https://recomb.org/recomb1999", "papers": [ { "author": "Eric Anson, Gene Myers", "title": "Algorithms for whole genome shotgun sequencing", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 1–9. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "1–9", "proceedings_doi": "10.1145/299432.299442" }, { "author": "Timothy L. Bailey, William Noble Grundy", "title": "Classifying proteins by family using the product of correlated p-values", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 10–14. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "10–14", "proceedings_doi": "10.1145/299432.299444" }, { "author": "Gill Bejerano, Golan Yona", "title": "Modeling protein families using probabilistic suffix trees", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 15–24. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "15–24", "proceedings_doi": "10.1145/299432.299445" }, { "author": "Jadwiga R. Bieńkowska, Robert G. Rogers, Temple F. Smith", "title": "A method for optimal design of a threading scoring function", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 25–32. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "25–32", "proceedings_doi": "10.1145/299432.299446" }, { "author": "Amir Ben-Dor, Zohar Yakhini", "title": "Clustering gene expression patterns", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 33–42. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "33–42", "proceedings_doi": "10.1145/299432.299448", "journal": "Journal of Computational Biology", "journal_title": "Clustering Gene Expression Patterns", "journal_authors": "Amir Ben‐Dor, Ron Shamir, Zohar Yakhini", "journal_issue_pages": "6(3-4): 281-297", "journal_year": "1999", "journal_doi": "10.1089/106652799318274" }, { "author": "Laurent Bize, Florence Muri, Franck Samson, François Rodolphe, S. Dusko Ehrlich, Bernard Prum, Philippe Bessières", "title": "Searching gene transfers on Bacillus subtilis using hidden Markov models", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 43–49. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "43–49", "proceedings_doi": "10.1145/299432.299449" }, { "author": "Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller", "title": "Winnowing sequences from a database search", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 50–58. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "50–58", "proceedings_doi": "10.1145/299432.299451", "journal": "Journal of Computational Biology", "journal_title": "Winnowing Sequences from a Database Search", "journal_authors": "Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller", "journal_issue_pages": "7(1-2): 293-302", "journal_year": "2000", "journal_doi": "10.1089/10665270050081531" }, { "author": "Vincent Berry, David Bryant", "title": "Faster reliable phylogenetic analysis", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 59–68. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "59–68", "proceedings_doi": "10.1145/299432.299457" }, { "author": "R. Bundschuh, T. Hwa", "title": "An analytic study of the phase transition line in local sequence alignment with gaps", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 70–76. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "70–76", "proceedings_doi": "10.1145/299432.349874", "journal": "Discrete Applied Mathematics", "journal_title": "An analytic study of the phase transition line in local sequence alignment with gaps", "journal_authors": "Ralf Bundschuh, Terence Hwa", "journal_issue_pages": "104(1-3): 113-142", "journal_year": "2000", "journal_doi": "10.1016/s0166-218x(00)00188-8" }, { "author": "Stefan Burkhardt, Andreas Crauser, Paolo Ferragina, Hans-Peter Lenhof, Eric Rivals, Martin Vingron", "title": "q-gram based database searching using a suffix array (QUASAR)", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 77–83. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "77–83", "proceedings_doi": "10.1145/299432.299460" }, { "author": "Alberto Caprara", "title": "Formulations and hardness of multiple sorting by reversals", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 84–93. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "84–93", "proceedings_doi": "10.1145/299432.299461" }, { "author": "Ting Chen, Vladimir Filkov, Steven S. Skiena", "title": "Identifying gene regulatory networks from experimental data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 94–103. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "94–103", "proceedings_doi": "10.1145/299432.299462", "journal": "Parallel Computing", "journal_title": "Identifying gene regulatory networks from experimental data", "journal_authors": "Ting Chen, Vladimir Filkov, Steven Skiena", "journal_issue_pages": "27(1-2): 141-162", "journal_year": "2001", "journal_doi": "10.1016/s0167-8191(00)00092-2" }, { "author": "L. Paul Chew, Dan Huttenlocher, Klara Kedem, Jon Kleinberg", "title": "Fast detection of common geometric substructure in proteins", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 104–113. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "104–113", "proceedings_doi": "10.1145/299432.299464", "journal": "Journal of Computational Biology", "journal_title": "Fast Detection of Common Geometric Substructure in Proteins", "journal_authors": "L. Paul Chew, D.P. Huttenlocher, Klara Kedem, Jon Kleinberg", "journal_issue_pages": "6(3-4): 313-325", "journal_year": "1999", "journal_doi": "10.1089/106652799318292" }, { "author": "Thomas Christof, John Kececioglu", "title": "Computing physical maps of chromosomes with nonoverlapping probes by branch-and-cut", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 115–123. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "115–123", "proceedings_doi": "10.1145/299432.299465" }, { "author": "Barry Cohen, Steven Skiena", "title": "Optimizing combinatorial library construction via split synthesis", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 124–133. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "124–133", "proceedings_doi": "10.1145/299432.299467" }, { "author": "Vlado Dančík, Theresa A. Addona, Karl R. Clauser, James E. Vath", "title": "De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 135–144. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "135–144", "proceedings_doi": "10.1145/299432.299471" }, { "author": "Alan A. Dombkowski, Gordon M. Crippen", "title": "A solvation potential with improved contact definitions and optimized by extensive threading", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 145–153. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "145–153", "proceedings_doi": "10.1145/299432.299474" }, { "author": "Nadia El-Mabrouk, David Bryant, David Sankoff", "title": "Reconstructing the pre-doubling genome", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 154–163. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "154–163", "proceedings_doi": "10.1145/299432.299475" }, { "author": "Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustova Stolovitzky, Yuan Gao", "title": "Sequence homology detection through large scale pattern discovery", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 164–173. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "164–173", "proceedings_doi": "10.1145/299432.299477" }, { "author": "Christian V. Forst, Klaus Schulten", "title": "Evolution of metabolisms: a new method for the comparison of metabolic pathways", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 174–181. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "174–181", "proceedings_doi": "10.1145/299432.299481", "journal": "Journal of Computational Biology", "journal_title": "Evolution of Metabolisms: A New Method for the Comparison of Metabolic Pathways Using Genomics Information", "journal_authors": "Christian V. Forst, Klaus Schulten", "journal_issue_pages": "6(3-4): 343-360", "journal_year": "1999", "journal_doi": "10.1089/106652799318319" }, { "author": "G. R. Grant, R. S. Spielman, E. Manduchi, V. G. Cheung, W. J. Ewens", "title": "Significance testing for genomic mismatch scanning", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 182–187. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "182–187", "proceedings_doi": "10.1145/299432.299482" }, { "author": "Erez Hartuv, Armin Schmitt, Jörg Lange, Sebastian Meier-Ewert, Hans Lehrach, Ron Shamir", "title": "An algorithm for clustering cDNAs for gene expression analysis", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 188–197. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "188–197", "proceedings_doi": "10.1145/299432.299483" }, { "author": "Daniel H. Huson, Scott Nettles, Tandy J. Warnow", "title": "Obtaining highly accurate topology estimates of evolutionary trees from very short sequences", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 198–207. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "198–207", "proceedings_doi": "10.1145/299432.299484" }, { "author": "Richard M. Karp, Roland Stoughton, Ka Yee Yeung", "title": "Algorithms for choosing differential gene expression experiments", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 208–217. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "208–217", "proceedings_doi": "10.1145/299432.299485" }, { "author": "Lawrence A. Kelley, Robert M. MacCallum, Michael J. E. Sternberg", "title": "Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 218–225. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "218–225", "proceedings_doi": "10.1145/299432.299486" }, { "author": "Jon M. Kleinberg", "title": "Efficient algorithms for protein sequence design and the analysis of certain evolutionary fitness landscapes", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 226–237. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "226–237", "proceedings_doi": "10.1145/299432.299487", "journal": "Journal of Computational Biology", "journal_title": "Efficient Algorithms for Protein Sequence Design and the Analysis of Certain Evolutionary Fitness Landscapes", "journal_authors": "Jon Kleinberg", "journal_issue_pages": "6(3-4): 387-404", "journal_year": "1999", "journal_doi": "10.1089/106652799318346" }, { "author": "Richard H. Lathrop", "title": "An anytime algorithm for gapped block protein threading with pair interactions", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 238–249. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "238–249", "proceedings_doi": "10.1145/299432.299488" }, { "author": "Steven M. LaValle, Paul W. Finn, Lydia E. Kavraki, Jeal-Claude Latombe", "title": "Efficient database screening for rational drug design using pharmacophore-constrained conformational search", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 250–260. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "250–260", "proceedings_doi": "10.1145/299432.299489" }, { "author": "Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen", "title": "Internal loops in RNA secondary structure prediction", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 260–267. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "260–267", "proceedings_doi": "10.1145/299432.299490", "journal": "Bioinformatics", "journal_title": "Fast evaluation of internal loops in RNA secondary structure prediction.", "journal_authors": "R B Lyngsø, Michael Zuker, Clara Nautrup Pedersen", "journal_issue_pages": "15(6): 440-445", "journal_year": "1999", "journal_doi": "10.1093/bioinformatics/15.6.440" }, { "author": "Guy Mayraz, Ron Shamir", "title": "Construction of physical maps from oligonucleotide fingerprints data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 268–277. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "268–277", "proceedings_doi": "10.1145/299432.299497", "journal": "Journal of Computational Biology", "journal_title": "Construction of Physical Maps from Oligonucleotide Fingerprints Data", "journal_authors": "Guy Mayraz, Ron Shamir", "journal_issue_pages": "6(2): 237-252", "journal_year": "1999", "journal_doi": "10.1089/cmb.1999.6.237" }, { "author": "Julie C. Mitchell, J. Ben Rosen, Andrew T. Phillips, Lynn F. Ten Eyck", "title": "Coupled optimization in protein docking", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 280–284. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "280–284", "proceedings_doi": "10.1145/299432.299502" }, { "author": "Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, William S. Beebee, Eric S. Lander, Bonnie Berger, Daniel J. Kleitman", "title": "A dictionary based approach for gene annotation", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 285–294. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "285–294", "proceedings_doi": "10.1145/299432.299504", "journal": "Journal of Computational Biology", "journal_title": "A Dictionary-Based Approach for Gene Annotation", "journal_authors": "Lior Pachter, Serafim Batzoglou, Valentin I. Spitkovsky, Eric Banks, Eric S. Lander, Daniel J. Kleitman, Bonnie Berger", "journal_issue_pages": "6(3-4): 419-430", "journal_year": "1999", "journal_doi": "10.1089/106652799318364" }, { "author": "Franco P. Preparata, Alan M. Frieze, Eli Upfal", "title": "On the power of universal bases in sequencing by hybridization", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 295–301. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "295–301", "proceedings_doi": "10.1145/299432.299505" }, { "author": "David Sankoff, Mathieu Blanchette", "title": "Probability models for genome rearrangement and linear invariants for phylogenetic inference", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 302–309. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "302–309", "proceedings_doi": "10.1145/299432.299506" }, { "author": "Maxim Totrov, Ruben Abagyan", "title": "Derivation of sensitive discrimination potential for virtual ligand screening", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 312–320. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "312–320", "proceedings_doi": "10.1145/299432.299509" }, { "author": "Martin J. Bayley, Valerie J. Gillet, Peter Willett, John Bradshaw, Darren V. S. Green", "title": "Computational analysis of molecular diversity for drug discovery", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 1999, pp 321–330. Association for Computing Machinery, New York, NY, USA.", "proceedings_pages": "321–330", "proceedings_doi": "10.1145/299432.299510" } ] }