{
  "title": "4th Annual International Conference on Research in Computational Molecular Biology",
  "location": "Tokyo, Japan",
  "dates": "April 8 - 11, 2000",
  "pc_chair": "Ron Shamir",
  "organization_committee": "Satoru Miyano (chair), Tatsuya Akutsu, Nir Friedman, Osamu Maruyama, Kenta Nakai, Asako Suzuki, Toshihisa Takagi, Ayako Tomiyasu",
  "keynotes": "Minoru Kanehisa, Hans Lehrach, Svante Paabo, Eric Davidson, Takashi Gojobori, Leroy Hood, Walter Gilbert, Yusuke Nakamura",
  "website": "https://recomb.org/recomb2000",
  "papers": [
    {
      "author": "Tatsuya Akutsu, Hiroki Arimura, Shinichi Shimozono",
      "title": "On approximation algorithms for local multiple alignment",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 1–7. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "1–7",
      "proceedings_doi": "10.1145/332306.332311"
    },
    {
      "author": "Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara",
      "title": "Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 8–14. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "8–14",
      "proceedings_doi": "10.1145/332306.332317",
      "journal": "Journal of Computational Biology",
      "journal_title": "Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function",
      "journal_authors": "Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara",
      "journal_issue_pages": "7(3-4): 331-343",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050817"
    },
    {
      "author": "E. Althaus, O. Kohlbacher, H.-P. Lenhof, P. Müller",
      "title": "A combinatorial approach to protein docking with flexible side-chains",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 15–24. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "15–24",
      "proceedings_doi": "10.1145/332306.332319",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Combinatorial Approach to Protein Docking with Flexible Side Chains",
      "journal_authors": "Ernst Althaus, Oliver Kohlbacher, Hans‐Peter Lenhof, Peter Müller",
      "journal_issue_pages": "535(4): 15-24",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652702760277336"
    },
    {
      "author": "Alberto Apostolico, Gill Bejerano",
      "title": "Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and space",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 25–32. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "25–32",
      "proceedings_doi": "10.1145/332306.332321",
      "journal": "Journal of Computational Biology",
      "journal_title": "Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and Space",
      "journal_authors": "Alberto Apostolico, Gill Bejerano",
      "journal_issue_pages": "7(3-4): 381-393",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050844"
    },
    {
      "author": "Chris Bailey-Kellogg, Alik Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce Randall Donald",
      "title": "The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 33–44. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "33–44",
      "proceedings_doi": "10.1145/332306.332323",
      "journal": "Journal of Computational Biology",
      "journal_title": "The NOESY Jigsaw: Automated Protein Secondary Structure and Main-Chain Assignment from Sparse, Unassigned NMR Data",
      "journal_authors": "Chris Bailey‐Kellogg, Alik S. Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce R. Donald",
      "journal_issue_pages": "7(3-4): 537-558",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050934"
    },
    {
      "author": "Serafim Batzoglou, Bonnie Berger, Jill Mesirov, Eric S. Lander",
      "title": "Sequencing a genome by walking with clone-end sequences: a mathematical analysis",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 45. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "45",
      "proceedings_doi": "10.1145/332306.332325",
      "journal": "Genome Research",
      "journal_title": "Sequencing a Genome by Walking with Clone-End Sequences: A Mathematical Analysis",
      "journal_authors": "Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander",
      "journal_issue_pages": "9(12): 1163-1174",
      "journal_year": "1999",
      "journal_doi": "10.1101/gr.9.12.1163"
    },
    {
      "author": "Serafim Batzoglou, Lior Pachter, Jill Mesirov, Bonnie Berger, Eric S. Lander",
      "title": "Human and mouse gene structure: comparative analysis and application to exon prediction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 46–53. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "46–53",
      "proceedings_doi": "10.1145/332306.332326",
      "journal": "Genome Research",
      "journal_title": "Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction",
      "journal_authors": "Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander",
      "journal_issue_pages": "10(7): 950-958",
      "journal_year": "2000",
      "journal_doi": "10.1101/gr.10.7.950"
    },
    {
      "author": "Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèel Schummer, Zohar Yakhini",
      "title": "Tissue classification with gene expression profiles",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 54–64. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "54–64",
      "proceedings_doi": "10.1145/332306.332328",
      "journal": "Journal of Computational Biology",
      "journal_title": "Tissue Classification with Gene Expression Profiles",
      "journal_authors": "Amir Ben‐Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini",
      "journal_issue_pages": "7(3-4): 559-583",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050943"
    },
    {
      "author": "Amir Ben-Dor, Richard Karp, Benno Schwikowski, Zohar Yakhini",
      "title": "Universal DNA tag systems: a combinatorial design scheme",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 65–75. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "65–75",
      "proceedings_doi": "10.1145/332306.332346",
      "journal": "Journal of Computational Biology",
      "journal_title": "Universal DNA Tag Systems: A Combinatorial Design Scheme",
      "journal_authors": "Amir Ben‐Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini",
      "journal_issue_pages": "7(3-4): 503-519",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050916"
    },
    {
      "author": "Jadwiga R. Bieńkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith",
      "title": "Comprehensive statistical method for protein fold recognition",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 76–85. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "76–85",
      "proceedings_doi": "10.1145/332306.332347"
    },
    {
      "author": "Ralf Bundschuh",
      "title": "An analytic approach to significance assessment in local sequence alignment with gaps",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 86–95. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "86–95",
      "proceedings_doi": "10.1145/332306.332350",
      "journal": "Journal of Computational Biology",
      "journal_title": "Rapid Significance Estimation in Local Sequence Alignment with Gaps",
      "journal_authors": "Ralf Bundschuh",
      "journal_issue_pages": "9(2): 243-260",
      "journal_year": "2002",
      "journal_doi": "10.1089/10665270252935449"
    },
    {
      "author": "Kevin Chen, Dannie Durand, Martin Farach-Colton",
      "title": "Notung: dating gene duplications using gene family trees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 96–106. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "96–106",
      "proceedings_doi": "10.1145/332306.332351",
      "journal": "Journal of Computational Biology",
      "journal_title": "NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees",
      "journal_authors": "Kevin Chen, Dannie Durand, Martı́n Farach-Colton",
      "journal_issue_pages": "7(3-4): 429-447",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050871"
    },
    {
      "author": "Xin Chen, Sam Kwong, Ming Li",
      "title": "A compression algorithm for DNA sequences and its applications in genome comparison",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 107. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "107",
      "proceedings_doi": "10.1145/332306.332352"
    },
    {
      "author": "Benny Chor, Michael D. Hendy, Barbara R. Holland, David Penny",
      "title": "Multiple maxima of likelihood in phylogenetic trees: an analytic approach",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 108–117. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "108–117",
      "proceedings_doi": "10.1145/332306.332353",
      "journal": "Molecular Biology and Evolution",
      "journal_title": "Multiple Maxima of Likelihood in Phylogenetic Trees: An Analytic Approach",
      "journal_authors": "Benny Chor, Michael D. Hendy, Barbara R. Holland, David Penny",
      "journal_issue_pages": "17(10): 1529-1541",
      "journal_year": "2000",
      "journal_doi": "10.1093/oxfordjournals.molbev.a026252"
    },
    {
      "author": "Richard Desper, Martin Vingron",
      "title": "Tree fitting: an algebraic approach using profile distances",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 119–126. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "119–126",
      "proceedings_doi": "10.1145/332306.332354"
    },
    {
      "author": "Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er",
      "title": "Using Bayesian networks to analyze expression data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 127–135. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "127–135",
      "proceedings_doi": "10.1145/332306.332355",
      "journal": "Journal of Computational Biology",
      "journal_title": "Using Bayesian Networks to Analyze Expression Data",
      "journal_authors": "Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe’er",
      "journal_issue_pages": "7(3-4): 601-620",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050961"
    },
    {
      "author": "Michael T. Hallett, Jens Lagergren",
      "title": "New algorithms for the duplication-loss model",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 138–146. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "138–146",
      "proceedings_doi": "10.1145/332306.332359",
      "journal": "Repository for Publications and Research Data (ETH Zurich)",
      "journal_title": "New algorithms for the duplication-loss model",
      "journal_authors": "Michael Hallett, Jens Lagergren",
      "journal_issue_pages": "330",
      "journal_year": "1999",
      "journal_doi": "10.3929/ethz-a-006653457"
    },
    {
      "author": "Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano",
      "title": "Systematic and automated discovery of patterns in PROSITE families",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 147–154. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "147–154",
      "proceedings_doi": "10.1145/332306.332360",
      "journal": "Journal of Computational Biology",
      "journal_title": "Systematic and Fully Automated Identification of Protein Sequence Patterns",
      "journal_authors": "Reece K. Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano",
      "journal_issue_pages": "7(3-4): 585-600",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050952"
    },
    {
      "author": "Steffan Heber, Jens Stoye, Jörg Hoheisel, Martin Vingron",
      "title": "Contig selection in physical mapping",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 155–164. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "155–164",
      "proceedings_doi": "10.1145/332306.332361",
      "journal": "Journal of Computational Biology",
      "journal_title": "Contig Selection in Physical Mapping",
      "journal_authors": "Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron",
      "journal_issue_pages": "7(3-4): 395-408",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050853"
    },
    {
      "author": "Maricel Kann, Richard A. Goldstein",
      "title": "Optimizing for success: a new score function for distantly related protein sequence comparison",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 177–182. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "177–182",
      "proceedings_doi": "10.1145/332306.332536"
    },
    {
      "author": "John Krececioglu, Sanjay Shete, Jonathan Arnold",
      "title": "Reconstructing distances in physical maps of chromosomes with nonoverlapping probes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 183–192. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "183–192",
      "proceedings_doi": "10.1145/332306.332540"
    },
    {
      "author": "Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kamierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga",
      "title": "UNRES: a united-residue force field for energy-based prediction of protein structure—orgin and significance of multibody terms",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 193–200. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "193–200",
      "proceedings_doi": "10.1145/332306.332544"
    },
    {
      "author": "Rune B. Lyngsø, Christian N. S. Pedersen",
      "title": "Pseudoknots in RNA secondary structures",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 201–209. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "201–209",
      "proceedings_doi": "10.1145/332306.332551",
      "journal": "BRICS Report Series",
      "journal_title": "Pseudoknots in RNA Secondary Structures",
      "journal_authors": "Rune B. Lyngsø, Christian N. S. Pedersen",
      "journal_issue_pages": "7(1)",
      "journal_year": "2000",
      "journal_doi": "10.7146/brics.v7i1.20129"
    },
    {
      "author": "Laurent Marsan, Marie-France Sagot",
      "title": "Extracting structured motifs using a suffix tree—algorithms and application to promoter consensus identification",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 210–219. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "210–219",
      "proceedings_doi": "10.1145/332306.332553",
      "journal": "Journal of Computational Biology",
      "journal_title": "Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification",
      "journal_authors": "Laurent Marsan, Marie-France Sagot",
      "journal_issue_pages": "7(3-4): 345-362",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050826"
    },
    {
      "author": "Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Yusuke Saito, S. Shimizu, Yoichi Nakayama",
      "title": "The E-CELL project: towards integrative simulation of cellular processes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 290–298. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "290–298",
      "proceedings_doi": "10.1145/332306.332567",
      "journal": "New Generation Computing",
      "journal_title": "The E-CELL project: Towards integrative simulation of cellular processes",
      "journal_authors": "Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Kanako Saito, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Sakura Tanida, Yûsuke Saito, Akiko Kawase, Naoko Watanabe, Thomas S. Simizu, Yoichi Nakayama",
      "journal_issue_pages": "18(1): 1-12",
      "journal_year": "2000",
      "journal_doi": "10.1007/bf03037563"
    },
    {
      "author": "Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu",
      "title": "Protein structure determination using protein threading and sparse NMR data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 299–307. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "299–307",
      "proceedings_doi": "10.1145/332306.332568"
    },
    {
      "author": "Golan Yona, Michael Levitt",
      "title": "A unified sequence-structure classification of protein sequences: combining sequence and structure in a map of the protein space",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 308–317. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "308–317",
      "proceedings_doi": "10.1145/332306.332569"
    },
    {
      "author": "Alexander Zein, Ralf Zimmer, Thomas Lengauer",
      "title": "A simple iterative approach to parameter optimization",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2000, pp 318–327. Association for Computing Machinery, New York, NY, USA.",
      "proceedings_pages": "318–327",
      "proceedings_doi": "10.1145/332306.332570",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Simple Iterative Approach to Parameter Optimization",
      "journal_authors": "Alexander Zien, Ralf Zimmer, Thomas Lengauer",
      "journal_issue_pages": "7(3-4): 483-501",
      "journal_year": "2000",
      "journal_doi": "10.1089/106652700750050907"
    }
  ]
}