{
  "title": "9th Annual International Conference on Research in Computational Molecular Biology",
  "location": "Cambridge, MA, United States",
  "dates": "May 14 - 18, 2005",
  "pc_chair": "Satoru Miyano",
  "organization_committee": "Jill P. Mesirov (co-chair), Simon Kasif (co-chair)",
  "keynotes": "David Altshuler, Wolfgang Baumeister, James Collins, Charles DeLisi, Jonathan King, Eric Lander, Michael Levine, Susan Lindquist",
  "website": "https://recomb.org/recomb2005",
  "papers": [
    {
      "author": "Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan",
      "title": "Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 1-13, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "1-13",
      "proceedings_doi": "10.1007/11415770_1",
      "journal": "Journal of Computational Biology",
      "journal_title": "Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks",
      "journal_authors": "Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan",
      "journal_issue_pages": "13(2): 133-144",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.133"
    },
    {
      "author": "Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman",
      "title": "Towards an Integrated Protein-Protein Interaction Network",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 14-30, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "14-30",
      "proceedings_doi": "10.1007/11415770_2",
      "journal": "Journal of Computational Biology",
      "journal_title": "Towards an Integrated Protein–Protein Interaction Network: A Relational Markov Network Approach",
      "journal_authors": "Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman",
      "journal_issue_pages": "13(2): 145-164",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.145"
    },
    {
      "author": "Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir",
      "title": "The Factor Graph Network Model for Biological Systems",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 31-47, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "31-47",
      "proceedings_doi": "10.1007/11415770_3"
    },
    {
      "author": "Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski",
      "title": "Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 48-65, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "48-65",
      "proceedings_doi": "10.1007/11415770_4",
      "journal": "Journal of Computational Biology",
      "journal_title": "Pairwise Alignment of Protein Interaction Networks",
      "journal_authors": "Mehmet Koyutürk, Yohan Kim, Umut Topkara, Shankar Subramaniam, Wojciech Szpankowski, Ananth Grama",
      "journal_issue_pages": "13(2): 182-199",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.182"
    },
    {
      "author": "Brendan J. Frey, Quaid D. Morris, Mark Robinson, Timothy R. Hughes",
      "title": "Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 66-82, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "66-82",
      "proceedings_doi": "10.1007/11415770_5"
    },
    {
      "author": "Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini",
      "title": "Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 83-100, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "83-100",
      "proceedings_doi": "10.1007/11415770_6",
      "journal": "Journal of Computational Biology",
      "journal_title": "Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis",
      "journal_authors": "Doron Lipson, Yonatan Aumann, Amir Ben‐Dor, Nathan Linial, Zohar Yakhini",
      "journal_issue_pages": "13(2): 215-228",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.215"
    },
    {
      "author": "Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung, Wen-Lian Hsu",
      "title": "RIBRA An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 103-117, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "103-117",
      "proceedings_doi": "10.1007/11415770_9",
      "journal": "Journal of Computational Biology",
      "journal_title": "RIBRA—An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem",
      "journal_authors": "Kun‐Pin Wu, Jia‐Ming Chang, Jun-Bo Chen, Chi‐Fon Chang, Wen‐Jin Wu, Tai-huang Huang, Ting-Yi Sung, Wen-Lian Hsu",
      "journal_issue_pages": "13(2): 229-244",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.229"
    },
    {
      "author": "Marshall Bern, Jindong Chen, Hao Chi Wong",
      "title": "Avoiding Local Optima in Single Particle Reconstruction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 118-132, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "118-132",
      "proceedings_doi": "10.1007/11415770_10"
    },
    {
      "author": "Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini",
      "title": "A High-Throughput Approach for Associating microRNAs with Their Activity Conditions",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 133-151, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "133-151",
      "proceedings_doi": "10.1007/11415770_11",
      "journal": "Journal of Computational Biology",
      "journal_title": "A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions",
      "journal_authors": "Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini",
      "journal_issue_pages": "13(2): 245-266",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.245"
    },
    {
      "author": "Can Alkan, Emre Karakoç, Joseph H. Nadeau, S. Cenk Sahinalp, Kaizhong Zhang",
      "title": "RNA-RNA Interaction Prediction and Antisense RNA Target Search",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 152-171, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "152-171",
      "proceedings_doi": "10.1007/11415770_12",
      "journal": "Journal of Computational Biology",
      "journal_title": "RNA-RNA Interaction Prediction and Antisense RNA Target Search",
      "journal_authors": "Can Alkan, Emre Karakoç, Joseph H. Nadeau, S. Cenk Sahinalp, Kaizhong Zhang",
      "journal_issue_pages": "13(2): 267-282",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.267"
    },
    {
      "author": "Vineet Bafna, Haixu Tang, Shaojie Zhang",
      "title": "Consensus Folding of Unaligned RNA Sequences Revisited",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 172-187, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "172-187",
      "proceedings_doi": "10.1007/11415770_13",
      "journal": "Journal of Computational Biology",
      "journal_title": "Consensus Folding of Unaligned RNA Sequences Revisited",
      "journal_authors": "Vineet Bafna, Haixu Tang, Shaojie Zhang",
      "journal_issue_pages": "13(2): 283-295",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.283"
    },
    {
      "author": "Kim R. Rasmussen, Jens Stoye, Eugene W. Myers",
      "title": "Efficient q-Gram Filters for Finding All ε-Matches over a Given Length",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 189-203, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "189-203",
      "proceedings_doi": "10.1007/11415770_15",
      "journal": "Journal of Computational Biology",
      "journal_title": "Efficient q-Gram Filters for Finding All ε-Matches over a Given Length",
      "journal_authors": "Kim R. Rasmussen, Jens Stoye, Eugene W. Myers",
      "journal_issue_pages": "13(2): 296-308",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.296"
    },
    {
      "author": "Sing-Hoi Sze, Yue Lu, Qingwu Yang",
      "title": "A Polynomial Time Solvable Formulation of Multiple Sequence Alignment",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 204-216, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "204-216",
      "proceedings_doi": "10.1007/11415770_16",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Polynomial Time Solvable Formulation of Multiple Sequence Alignment",
      "journal_authors": "Sing-Hoi Sze, Yue Lu, Qingwu Yang",
      "journal_issue_pages": "13(2): 309-319",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.309"
    },
    {
      "author": "Dan Gusfield, Vikas Bansal",
      "title": "A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 217-232, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "217-232",
      "proceedings_doi": "10.1007/11415770_17",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Decomposition Theory for Phylogenetic Networks and Incompatible Characters",
      "journal_authors": "Dan Gusfield, Vikas Bansal, Vineet Bafna, Yun S. Song",
      "journal_issue_pages": "14(10): 1247-1272",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2006.0137"
    },
    {
      "author": "Daniel H. Huson, Tobias Klöpper, Pete J. Lockhart, Mike A. Steel",
      "title": "Reconstruction of Reticulate Networks from Gene Trees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 233-249, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "233-249",
      "proceedings_doi": "10.1007/11415770_18"
    },
    {
      "author": "Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot",
      "title": "A Hybrid Micro-macroevolutionary Approach to Gene Tree Reconstruction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 250-264, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "250-264",
      "proceedings_doi": "10.1007/11415770_19",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Hybrid Micro–Macroevolutionary Approach to Gene Tree Reconstruction",
      "journal_authors": "Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot",
      "journal_issue_pages": "13(2): 320-335",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.320"
    },
    {
      "author": "Trinh N.D. Huynh, Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung",
      "title": "Constructing a Smallest Refining Galled Phylogenetic Network",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 265-280, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "265-280",
      "proceedings_doi": "10.1007/11415770_20"
    },
    {
      "author": "David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor",
      "title": "Information Theoretic Approaches to Whole Genome Phylogenies",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 283-295, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "283-295",
      "proceedings_doi": "10.1007/11415770_22"
    },
    {
      "author": "Benny Chor, Tamir Tuller",
      "title": "Maximum Likelihood of Evolutionary Trees Is Hard",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 296-310, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "296-310",
      "proceedings_doi": "10.1007/11415770_23"
    },
    {
      "author": "Teresa Przytycka, George Davis, Nan Song, Dannie Durand",
      "title": "Graph Theoretical Insights into Evolution of Multidomain Proteins",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 311-325, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "311-325",
      "proceedings_doi": "10.1007/11415770_24",
      "journal": "Journal of Computational Biology",
      "journal_title": "Graph Theoretical Insights into Evolution of Multidomain Proteins",
      "journal_authors": "Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand",
      "journal_issue_pages": "13(2): 351-363",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.351"
    },
    {
      "author": "Ari Frank, Stephen Tanner, Pavel Pevzner",
      "title": "Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 326-341, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "326-341",
      "proceedings_doi": "10.1007/11415770_25",
      "journal": "Journal of Proteome Research",
      "journal_title": "Peptide sequence tags for fast database search in mass-spectrometry",
      "journal_authors": "Ari Frank, Stephen Tanner, Vineet Bafna, Pavel Pevzner",
      "journal_issue_pages": "4(4):1287-95",
      "journal_year": "2005",
      "journal_doi": "10.1021/pr050011x"
    },
    {
      "author": "Yunhu Wan, Ting Chen",
      "title": "A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 342-356, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "342-356",
      "proceedings_doi": "10.1007/11415770_26",
      "journal": "Analytical Chemistry",
      "journal_title": "PepHMM: A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search",
      "journal_authors": "Yunhu Wan, Austin J. Yang, Ting Chen",
      "journal_issue_pages": "78(2): 432-437",
      "journal_year": "2005",
      "journal_doi": "10.1021/ac051319a"
    },
    {
      "author": "Marshall Bern, David Goldberg",
      "title": "EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 357-372, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "357-372",
      "proceedings_doi": "10.1007/11415770_27",
      "journal": "Journal of Computational Biology",
      "journal_title": "De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning",
      "journal_authors": "Marshall Bern, David Theo Goldberg",
      "journal_issue_pages": "13(2): 364-378",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.364"
    },
    {
      "author": "Samuel S. Gross, Michael R. Brent",
      "title": "Using Multiple Alignments to Improve Gene Prediction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 374-388, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "374-388",
      "proceedings_doi": "10.1007/11415770_29",
      "journal": "Journal of Computational Biology",
      "journal_title": "Using Multiple Alignments to Improve Gene Prediction",
      "journal_authors": "Samuel S. Gross, Michael R. Brent",
      "journal_issue_pages": "13(2): 379-393",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.379"
    },
    {
      "author": "S. Sonnenburg, G. Rätsch, C. Schäfer",
      "title": "Learning Interpretable SVMs for Biological Sequence Classification",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 389-407, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "389-407",
      "proceedings_doi": "10.1007/11415770_30",
      "journal": "BMC Bioinformatics",
      "journal_title": "Learning Interpretable SVMs for Biological Sequence Classification",
      "journal_authors": "Gunnar Rätsch, Sören Sonnenburg, Christin Schäfer",
      "journal_issue_pages": "7: S9",
      "journal_year": "2006",
      "journal_doi": "10.1186/1471-2105-7-s1-s9"
    },
    {
      "author": "Yan Liu, Jaime Carbonell, Peter Weigele, Vanathi Gopalakrishnan",
      "title": "Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 408-422, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "408-422",
      "proceedings_doi": "10.1007/11415770_31",
      "journal": "Journal of Computational Biology",
      "journal_title": "Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)",
      "journal_authors": "Yan Liu, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan",
      "journal_issue_pages": "13(2): 394-406",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.394"
    },
    {
      "author": "Jinbo Xu",
      "title": "Rapid Protein Side-Chain Packing via Tree Decomposition",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 423-439, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "423-439",
      "proceedings_doi": "10.1007/11415770_32"
    },
    {
      "author": "Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson",
      "title": "Recognition of Binding Patterns Common to a Set of Protein Structures",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 440-455, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "440-455",
      "proceedings_doi": "10.1007/11415770_33"
    },
    {
      "author": "Chen Yanover, Tomer Hertz",
      "title": "Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 456-471, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "456-471",
      "proceedings_doi": "10.1007/11415770_34",
      "journal": "BMC Bioinformatics",
      "journal_title": "PepDist: A New Framework for Protein-Peptide Binding Prediction based on Learning Peptide Distance Functions",
      "journal_authors": "Tomer Hertz, Chen Yanover",
      "journal_issue_pages": "7: S3",
      "journal_year": "2006",
      "journal_doi": "10.1186/1471-2105-7-s1-s3"
    },
    {
      "author": "Nicholas Chia, Ralf Bundschuh",
      "title": "A Practical Approach to Significance Assessment in Alignment with Gaps",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 474-488, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "474-488",
      "proceedings_doi": "10.1007/11415770_36",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Practical Approach to Significance Assessment in Alignment with Gaps",
      "journal_authors": "Nicholas Chia, Ralf Bundschuh",
      "journal_issue_pages": "13(2): 429-441",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.429"
    },
    {
      "author": "Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman",
      "title": "Alignment of Optical Maps",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 489-504, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "489-504",
      "proceedings_doi": "10.1007/11415770_37",
      "journal": "Journal of Computational Biology",
      "journal_title": "Alignment of Optical Maps",
      "journal_authors": "Anton Valouev, Lei Li, Yu‐Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman",
      "journal_issue_pages": "13(2): 442-462",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.442"
    },
    {
      "author": "Chen-Hsiang Yeang, Tommi Jaakkola",
      "title": "Modeling the Combinatorial Functions of Multiple Transcription Factors",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 506-521, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "506-521",
      "proceedings_doi": "10.1007/11415770_39",
      "journal": "Journal of Computational Biology",
      "journal_title": "Modeling the Combinatorial Functions of Multiple Transcription Factors",
      "journal_authors": "Chen‐Hsiang Yeang, Tommi Jaakkola",
      "journal_issue_pages": "13(2): 463-480",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.463"
    },
    {
      "author": "Tommy Kaplan, Nir Friedman, Hanah Margalit",
      "title": "Predicting Transcription Factor Binding Sites Using Structural Knowledge",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 522-537, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "522-537",
      "proceedings_doi": "10.1007/11415770_40"
    },
    {
      "author": "Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris H. Wiggins, Christina Leslie",
      "title": "Motif Discovery Through Predictive Modeling of Gene Regulation",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 538-552, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "538-552",
      "proceedings_doi": "10.1007/11415770_41"
    },
    {
      "author": "Eran Halperin, Elad Hazan",
      "title": "HAPLOFREQ Estimating Haplotype Frequencies Efficiently",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 553-568, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "553-568",
      "proceedings_doi": "10.1007/11415770_42",
      "journal": "Journal of Computational Biology",
      "journal_title": "HAPLOFREQ—Estimating Haplotype Frequencies Efficiently",
      "journal_authors": "Eran Halperin, Elad Hazan",
      "journal_issue_pages": "13(2): 481-500",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.481"
    },
    {
      "author": "Vineet Bafna, Vikas Bansal",
      "title": "Improved Recombination Lower Bounds for Haplotype Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 569-584, Springer, Cham.",
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    },
    {
      "author": "Zhihong Ding, Vladimir Filkov, Dan Gusfield",
      "title": "A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 585-600, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "585-600",
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      "journal": "Journal of Computational Biology",
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      "journal_issue_pages": "13(2): 522-553",
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    {
      "author": "David Sankoff, Matthew Mazowita",
      "title": "Stability of Rearrangement Measures in the Comparison of Genome Sequences",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 603-614, Springer, Cham.",
      "proceedings_volume": "3500",
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      "journal": "Journal of Computational Biology",
      "journal_title": "Stability of Rearrangement Measures in the Comparison of Genome Sequences",
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    },
    {
      "author": "Anne Bergeron, Julia Mixtacki, Jens Stoye",
      "title": "On Sorting by Translocations",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2005. Lecture Notes in Computer Science, vol 3500, pp 615-630, Springer, Cham.",
      "proceedings_volume": "3500",
      "proceedings_pages": "615-630",
      "proceedings_doi": "10.1007/11415770_47",
      "journal": "Journal of Computational Biology",
      "journal_title": "On Sorting by Translocations",
      "journal_authors": "Anne Bergeron, Julia Mixtacki, Jens Stoye",
      "journal_issue_pages": "13(2): 567-578",
      "journal_year": "2006",
      "journal_doi": "10.1089/cmb.2006.13.567"
    }
  ]
}