{
  "title": "10th Annual International Conference on Research in Computational Molecular Biology",
  "location": "Venice, Italy",
  "dates": "April 2 - 5, 2006",
  "pc_chair": "Alberto Apostolico",
  "organization_committee": "Concettina Guerra (chair), Matteo Comin, Eleazar Eskin, Raffaele Giancarlo, Giuseppe Lancia, Cinzia Pizzi, Angela Visco, Nicola Vitacolonna",
  "keynotes": "Anne-Claude Gavin, David Haussler, Ajay Royyuru, David Sankoff, Michael Waterman, Carl Zimmer, Roman Zubarev",
  "website": "https://recomb.org/recomb2006",
  "papers": [
    {
      "author": "Balaji S. Srinivasan, Antal F. Novak, Jason A. Flannick, Serafim Batzoglou, Harley H. McAdams",
      "title": "Integrated Protein Interaction Networks for 11 Microbes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 1-14, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "1-14",
      "proceedings_doi": "10.1007/11732990_1"
    },
    {
      "author": "Xiaoduan Ye, Alan M. Friedman, Chris Bailey-Kellogg",
      "title": "Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 15-29, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "15-29",
      "proceedings_doi": "10.1007/11732990_2",
      "journal": "Journal of Computational Biology",
      "journal_title": "Hypergraph Model of Multi-Residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination",
      "journal_authors": "Xiaoduan Ye, Alan M. Friedman, Chris Bailey‐Kellogg",
      "journal_issue_pages": "14(6): 777-790",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r016"
    },
    {
      "author": "Benny Chor, Tamir Tuller",
      "title": "Biological Networks: Comparison, Conservation, and Evolutionary Trees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 30-44, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "30-44",
      "proceedings_doi": "10.1007/11732990_3"
    },
    {
      "author": "Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski",
      "title": "Assessing Significance of Connectivity and Conservation in Protein Interaction Networks",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 45-59, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "45-59",
      "proceedings_doi": "10.1007/11732990_4",
      "journal": "Journal of Computational Biology",
      "journal_title": "Assessing Significance of Connectivity and Conservation in Protein Interaction Networks",
      "journal_authors": "Mehmet Koyutürk, Wojciech Szpankowski, Ananth Grama",
      "journal_issue_pages": "14(6): 747-764",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r014"
    },
    {
      "author": "Ling Wang, Marco Ramoni, Paola Sebastiani",
      "title": "Clustering Short Gene Expression Profiles",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 60-68, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "60-68",
      "proceedings_doi": "10.1007/11732990_5"
    },
    {
      "author": "Naftali Kaminski, Ziv Bar-Joseph",
      "title": "A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 69-82, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "69-82",
      "proceedings_doi": "10.1007/11732990_6",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies",
      "journal_authors": "Naftali Kaminski, Ziv Bar‐Joseph",
      "journal_issue_pages": "14(3): 324-338",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.0001"
    },
    {
      "author": "Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron",
      "title": "An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 85-98, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "85-98",
      "proceedings_doi": "10.1007/11732990_9",
      "journal": "Bioinformatics",
      "journal_title": "Improved detection of overrepresentation of Gene-Ontology annotations with parent–child analysis",
      "journal_authors": "Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron",
      "journal_issue_pages": "23(22): 3024-3031",
      "journal_year": "2007",
      "journal_doi": "10.1093/bioinformatics/btm440"
    },
    {
      "author": "Akshay Vashist, Casimir Kulikowski, Ilya Muchnik",
      "title": "Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 99-113, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "99-113",
      "proceedings_doi": "10.1007/11732990_10"
    },
    {
      "author": "Jim C. Huang, Quaid D. Morris, Brendan J. Frey",
      "title": "Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 114-129, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "114-129",
      "proceedings_doi": "10.1007/11732990_11",
      "journal": "Journal of Computational Biology",
      "journal_title": "Bayesian Inference of MicroRNA Targets from Sequence and Expression Data",
      "journal_authors": "Jim Huang, Quaid Morris, Brendan J. Frey",
      "journal_issue_pages": "14(5): 550-563",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r002"
    },
    {
      "author": "Can Alkan, Emre Karakoc, S. Cenk Sahinalp, Peter Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler",
      "title": "RNA Secondary Structure Prediction Via Energy Density Minimization",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 130-142, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "130-142",
      "proceedings_doi": "10.1007/11732990_12"
    },
    {
      "author": "Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna",
      "title": "Structural Alignment of Pseudoknotted RNA",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 143-158, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "143-158",
      "proceedings_doi": "10.1007/11732990_13",
      "journal": "Journal of Computational Biology",
      "journal_title": "Structural Alignment of Pseudoknotted RNA",
      "journal_authors": "Buhm Han, Banu Dost, Vineet Bafna, Shaojie Zhang",
      "journal_issue_pages": "15(5): 489-504",
      "journal_year": "2008",
      "journal_doi": "10.1089/cmb.2007.0214"
    },
    {
      "author": "Chuong B. Do, Samuel S. Gross, Serafim Batzoglou",
      "title": "CONTRAlign: Discriminative Training for Protein Sequence Alignment",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 160-174, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "160-174",
      "proceedings_doi": "10.1007/11732990_15"
    },
    {
      "author": "Michael Cameron, Yaniv Bernstein, Hugh E. Williams",
      "title": "Clustering Near-Identical Sequences for Fast Homology Search",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 175-189, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "175-189",
      "proceedings_doi": "10.1007/11732990_16",
      "journal": "Journal of Computational Biology",
      "journal_title": "Clustered Sequence Representation for Fast Homology Search",
      "journal_authors": "Michael J. Cameron, Yaniv Bernstein, Hugh Williams",
      "journal_issue_pages": "14(5): 594-614",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r005"
    },
    {
      "author": "Adam Siepel, Katherine S. Pollard, David Haussler",
      "title": "New Methods for Detecting Lineage-Specific Selection",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 190-205, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "190-205",
      "proceedings_doi": "10.1007/11732990_17"
    },
    {
      "author": "Miklós Csűrös, István Miklós",
      "title": "A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 206-220, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "206-220",
      "proceedings_doi": "10.1007/11732990_18"
    },
    {
      "author": "Nicholas D. Pattengale, Bernard M.E. Moret",
      "title": "A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 221-230, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "221-230",
      "proceedings_doi": "10.1007/11732990_19"
    },
    {
      "author": "Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H. Langley, Yufeng Wu",
      "title": "Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 231-245, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "231-245",
      "proceedings_doi": "10.1007/11732990_20",
      "journal": "Journal of Computational Biology",
      "journal_title": "Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations",
      "journal_authors": "Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H. Langley, Yufeng Wu",
      "journal_issue_pages": "14(10): 1273-1286",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.0096"
    },
    {
      "author": "Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim",
      "title": "Efficient Enumeration of Phylogenetically Informative Substrings",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 248-264, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "248-264",
      "proceedings_doi": "10.1007/11732990_22",
      "journal": "Journal of Computational Biology",
      "journal_title": "Efficient Enumeration of Phylogenetically Informative Substrings",
      "journal_authors": "Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim",
      "journal_issue_pages": "14(6): 701-723",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r011"
    },
    {
      "author": "Sagi Snir, Lior Pachter",
      "title": "Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 265-280, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "265-280",
      "proceedings_doi": "10.1007/11732990_23"
    },
    {
      "author": "Constantinos Daskalakis, Cameron Hill, Alexandar Jaffe, Radu Mihaescu, Elehanan Mossel, Satish Rao",
      "title": "Maximal Accurate Forests from Distance Matrices",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 281-295, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "281-295",
      "proceedings_doi": "10.1007/11732990_24"
    },
    {
      "author": "David Heckerman, Carl Kadie, Jennifer Listgarten",
      "title": "Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 296-308, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "296-308",
      "proceedings_doi": "10.1007/11732990_25",
      "journal": "Journal of Computational Biology",
      "journal_title": "Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction",
      "journal_authors": "David Heckerman, Carl Kadie, Jennifer Listgarten",
      "journal_issue_pages": "14(6): 736-746",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r013"
    },
    {
      "author": "Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato",
      "title": "Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 309-320, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "309-320",
      "proceedings_doi": "10.1007/11732990_26"
    },
    {
      "author": "Teresa M. Przytycka",
      "title": "An Important Connection Between Network Motifs and Parsimony Models",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 321-335, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "321-335",
      "proceedings_doi": "10.1007/11732990_27"
    },
    {
      "author": "Stefanie Scheid, Rainer Spang",
      "title": "Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 338-347, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "338-347",
      "proceedings_doi": "10.1007/11732990_29"
    },
    {
      "author": "Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano",
      "title": "Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 348-362, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "348-362",
      "proceedings_doi": "10.1007/11732990_30"
    },
    {
      "author": "Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel Pevzner",
      "title": "A New Approach to Protein Identification",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 363-378, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "363-378",
      "proceedings_doi": "10.1007/11732990_31",
      "journal": "Proceedings of the National Academy of Sciences",
      "journal_title": "Protein identification by spectral networks analysis",
      "journal_authors": "Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner",
      "journal_issue_pages": "104(15): 6140-6145",
      "journal_year": "2007",
      "journal_doi": "10.1073/pnas.0701130104"
    },
    {
      "author": "Chakra Chennubhotla, Ivet Bahar",
      "title": "Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 379-393, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "379-393",
      "proceedings_doi": "10.1007/11732990_32",
      "journal": "Journal of Computational Biology",
      "journal_title": "Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics",
      "journal_authors": "Chakra Chennubhotla, İvet Bahar",
      "journal_issue_pages": "14(6): 765-776",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r015"
    },
    {
      "author": "Shawna Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato",
      "title": "Simulating Protein Motions with Rigidity Analysis",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 394-409, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "394-409",
      "proceedings_doi": "10.1007/11732990_33",
      "journal": "Journal of Computational Biology",
      "journal_title": "Simulating Protein Motions with Rigidity Analysis",
      "journal_authors": "Shawna Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato",
      "journal_issue_pages": "14(6): 839-855",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r019"
    },
    {
      "author": "Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe",
      "title": "Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 410-424, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "410-424",
      "proceedings_doi": "10.1007/11732990_34",
      "journal": "Journal of Computational Biology",
      "journal_title": "Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values",
      "journal_authors": "Tsung-Han Chiang, Mehmet Serkan Apaydın, Douglas L. Brutlag, David Hsu, Jean‐Claude Latombe",
      "journal_issue_pages": "14(5): 578-593",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r004"
    },
    {
      "author": "Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt",
      "title": "Alignment Statistics for Long-Range Correlated Genomic Sequences",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 426-440, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "426-440",
      "proceedings_doi": "10.1007/11732990_36"
    },
    {
      "author": "John Kececioglu, Eagu Kim",
      "title": "Simple and Fast Inverse Alignment",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 441-455, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "441-455",
      "proceedings_doi": "10.1007/11732990_37"
    },
    {
      "author": "Samuel A. Andersson, Jens Lagergren",
      "title": "Motif Yggdrasil: Sampling from a Tree Mixture Model",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 458-472, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "458-472",
      "proceedings_doi": "10.1007/11732990_39",
      "journal": "Journal of Computational Biology",
      "journal_title": "Motif Yggdrasil: Sampling Sequence Motifs from a Tree Mixture Model",
      "journal_authors": "Samuel A. Andersson, Jens Lagergren",
      "journal_issue_pages": "14(5): 682-697",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r010"
    },
    {
      "author": "Ydo Wexler, Chaya Zilberstein, Michal Ziv-Ukelson",
      "title": "A Study of Accessible Motifs and RNA Folding Complexity",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 473-487, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "473-487",
      "proceedings_doi": "10.1007/11732990_40",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Study of Accessible Motifs and RNA Folding Complexity",
      "journal_authors": "Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson",
      "journal_issue_pages": "14(6): 856-872",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r020"
    },
    {
      "author": "Jinbo Xu, Feng Jiao, Bonnie Berger",
      "title": "A Parameterized Algorithm for Protein Structure Alignment",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 488-499, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "488-499",
      "proceedings_doi": "10.1007/11732990_41",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Parameterized Algorithm for Protein Structure Alignment",
      "journal_authors": "Jinbo Xu, Feng Jiao, Bonnie Berger",
      "journal_issue_pages": "14(5): 564-577",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r003"
    },
    {
      "author": "Brian Y. Chen, Viacheslav Y. Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas M. Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki",
      "title": "Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 500-515, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "500-515",
      "proceedings_doi": "10.1007/11732990_42"
    },
    {
      "author": "Wei Xie, Nikolaos V. Sahinidis",
      "title": "A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 516-529, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "516-529",
      "proceedings_doi": "10.1007/11732990_43",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Reduction-Based Exact Algorithm for the Contact Map Overlap Problem",
      "journal_authors": "Wei Xie, Nikolaos V. Sahinidis",
      "journal_issue_pages": "14(5): 637-654",
      "journal_year": "2007",
      "journal_doi": "10.1089/cmb.2007.r007"
    },
    {
      "author": "Ivelin Georgiev, Ryan H. Lilien, Bruce R. Donald",
      "title": "A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 530-545, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "530-545",
      "proceedings_doi": "10.1007/11732990_44",
      "journal": "Journal of Computational Chemistry",
      "journal_title": "The minimized dead‐end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles",
      "journal_authors": "Ivelin S. Georgiev, Ryan Lilien, Bruce R. Donald",
      "journal_issue_pages": "29(10): 1527-1542",
      "journal_year": "2008",
      "journal_doi": "10.1002/jcc.20909"
    },
    {
      "author": "Martin Bader, Enno Ohlebusch",
      "title": "Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2006. Lecture Notes in Computer Science, vol 3909, pp 563-577, Springer, Cham.",
      "proceedings_volume": "3909",
      "proceedings_pages": "563-577",
      "proceedings_doi": "10.1007/11732990_46",
      "journal": "Journal of Computational Biology",
      "journal_title": "Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions",
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  ]
}