{
  "title": "13th Annual International Conference on Research in Computational Molecular Biology",
  "location": "Tucson, AZ, United States",
  "dates": "May 18 - 21, 2009",
  "pc_chair": "Serafim Batzoglou",
  "organization_committee": "John Kececioglu (chair)",
  "keynotes": "Carlos D. Bustamante, Rade Drmanac, Mark Gerstein, Eran Halperin, Michael Hammer, Joanna Mountain, Stephen Quake, Mostafa Ronaghi, Pardis Sabeti, Michael Snyder",
  "website": "https://recomb.org/recomb2009",
  "papers": [
    {
      "author": "Tetsuo Shibuya",
      "title": "Searching Protein 3-D Structures in Linear Time",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 1-15, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "1-15",
      "proceedings_doi": "10.1007/978-3-642-02008-7_1",
      "journal": "Journal of Computational Biology",
      "journal_title": "Searching Protein 3-D Structures in Linear Time",
      "journal_authors": "Tetsuo Shibuya",
      "journal_issue_pages": "17(3): 203-219",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0148"
    },
    {
      "author": "Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu",
      "title": "Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 16-30, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "16-30",
      "proceedings_doi": "10.1007/978-3-642-02008-7_2",
      "journal": "Journal of Computational Biology",
      "journal_title": "Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification",
      "journal_authors": "Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu",
      "journal_issue_pages": "17(3): 221-235",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0160"
    },
    {
      "author": "Jian Peng and Jinbo Xu",
      "title": "Boosting Protein Threading Accuracy",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 31-45, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "31-45",
      "proceedings_doi": "10.1007/978-3-642-02008-7_3"
    },
    {
      "author": "Cedric Chauve and Nadia El-Mabrouk",
      "title": "New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 46-58, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "46-58",
      "proceedings_doi": "10.1007/978-3-642-02008-7_4"
    },
    {
      "author": "Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu",
      "title": "A Probabilistic Graphical Model for Ab Initio Folding",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 59-73, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "59-73",
      "proceedings_doi": "10.1007/978-3-642-02008-7_5"
    },
    {
      "author": "Sharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan",
      "title": "Topology-Free Querying of Protein Interaction Networks",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 74-89, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "74-89",
      "proceedings_doi": "10.1007/978-3-642-02008-7_6",
      "journal": "Nucleic Acids Research",
      "journal_title": "Torque: topology-free querying of protein interaction networks",
      "journal_authors": "Stefan Brückner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan",
      "journal_issue_pages": "37(Web Server): W106-W108",
      "journal_year": "2009",
      "journal_doi": "10.1093/nar/gkp474"
    },
    {
      "author": "Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph",
      "title": "Cross Species Expression Analysis of Innate Immune Response",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 90-107, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "90-107",
      "proceedings_doi": "10.1007/978-3-642-02008-7_7",
      "journal": "Journal of Computational Biology",
      "journal_title": "Cross Species Expression Analysis of Innate Immune Response",
      "journal_authors": "Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar‐Joseph",
      "journal_issue_pages": "17(3): 253-268",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0147"
    },
    {
      "author": "Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp",
      "title": "Haplotype Inference in Complex Pedigrees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 108-120, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "108-120",
      "proceedings_doi": "10.1007/978-3-642-02008-7_8",
      "journal": "Journal of Computational Biology",
      "journal_title": "Haplotype Inference in Complex Pedigrees",
      "journal_authors": "Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp",
      "journal_issue_pages": "17(3): 269-280",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0174"
    },
    {
      "author": "Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki",
      "title": "Storage and Retrieval of Individual Genomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 121-137, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "121-137",
      "proceedings_doi": "10.1007/978-3-642-02008-7_9",
      "journal": "DROPS (Schloss Dagstuhl – Leibniz Center for Informatics)",
      "journal_title": "Storage and Retrieval of Individual Genomes",
      "journal_authors": "Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki",
      "journal_issue_pages": "0",
      "journal_year": "2008",
      "journal_doi": "10.4230/dagsemproc.08261.10"
    },
    {
      "author": "Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher J. Langmead",
      "title": "An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 138-154, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "138-154",
      "proceedings_doi": "10.1007/978-3-642-02008-7_10",
      "journal": "Journal of Computational Biology",
      "journal_title": "An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations",
      "journal_authors": "Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher J. Langmead",
      "journal_issue_pages": "17(3): 309-324",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0167"
    },
    {
      "author": "Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher J. Langmead",
      "title": "Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 155-169, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "155-169",
      "proceedings_doi": "10.1007/978-3-642-02008-7_11",
      "journal": "Journal of Computational Biology",
      "journal_title": "Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology",
      "journal_authors": "Alexandre Donzé, Gilles Clermont, Christopher J. Langmead",
      "journal_issue_pages": "17(3): 325-336",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0172"
    },
    {
      "author": "Rami Jaschek and Amos Tanay",
      "title": "Spatial Clustering of Multivariate Genomic and Epigenomic Information",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 170-183, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "170-183",
      "proceedings_doi": "10.1007/978-3-642-02008-7_12"
    },
    {
      "author": "Nicholas D. Pattengale, Masoud Alipour, Olaf R.P. Bininda-Emonds, Bernard M.E. Moret, Alexandros Stamatakis",
      "title": "How Many Bootstrap Replicates Are Necessary?",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 184-200, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "184-200",
      "proceedings_doi": "10.1007/978-3-642-02008-7_13",
      "journal": "Journal of Computational Biology",
      "journal_title": "How Many Bootstrap Replicates Are Necessary?",
      "journal_authors": "Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda‐Emonds, Bernard M. E. Moret, Alexandros Stamatakis",
      "journal_issue_pages": "17(3): 337-354",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0179"
    },
    {
      "author": "Oliver Stegle, Katherine Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt",
      "title": "A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 201-216, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "201-216",
      "proceedings_doi": "10.1007/978-3-642-02008-7_14",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series",
      "journal_authors": "Oliver Stegle, Katherine Denby, Emma J. Cooke, David L. Wild, Zoubin Ghahramani, Karsten Borgwardt",
      "journal_issue_pages": "17(3): 355-367",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0175"
    },
    {
      "author": "Tali Raveh-Sadka, Michal Levo, Eran Segal",
      "title": "Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 217-217, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "217-217",
      "proceedings_doi": "10.1007/978-3-642-02008-7_15",
      "journal": "Genome Research",
      "journal_title": "Incorporating nucleosomes into thermodynamic models of transcription regulation",
      "journal_authors": "Tali Raveh-Sadka, Michal Levo, Eran Segal",
      "journal_issue_pages": "19(8): 1480-1496",
      "journal_year": "2009",
      "journal_doi": "10.1101/gr.088260.108"
    },
    {
      "author": "Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp",
      "title": "Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 218-219, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "218-219",
      "proceedings_doi": "10.1007/978-3-642-02008-7_16",
      "journal": "Genome Research",
      "journal_title": "Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes",
      "journal_authors": "Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp",
      "journal_issue_pages": "19(7): 1270-1278",
      "journal_year": "2009",
      "journal_doi": "10.1101/gr.088633.108"
    },
    {
      "author": "Ali Bashir, Qing Lu, Dennis Carson, Benjamin Raphael, Yu-Tsueng Liu, Vineet Bafna",
      "title": "Optimizing PCR Assays for DNA Based Cancer Diagnostics",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 220-235, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "220-235",
      "proceedings_doi": "10.1007/978-3-642-02008-7_17",
      "journal": "Journal of Computational Biology",
      "journal_title": "Optimizing PCR Assays for DNA-Based Cancer Diagnostics",
      "journal_authors": "Ali Bashir, Qing Lü, Dennis A. Carson, Benjamin J. Raphael, Yu‐Tsueng Liu, Vineet Bafna",
      "journal_issue_pages": "17(3): 369-381",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0203"
    },
    {
      "author": "Dan Gusfield",
      "title": "The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 236-252, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "236-252",
      "proceedings_doi": "10.1007/978-3-642-02008-7_18",
      "journal": "Journal of Computational Biology",
      "journal_title": "The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory",
      "journal_authors": "Dan Gusfield",
      "journal_issue_pages": "17(3): 383-399",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0200"
    },
    {
      "author": "Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wang",
      "title": "COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 253-269, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "253-269",
      "proceedings_doi": "10.1007/978-3-642-02008-7_19",
      "journal": "Journal of Computational Biology",
      "journal_title": "COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study",
      "journal_authors": "Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wang",
      "journal_issue_pages": "17(3): 401-415",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0155"
    },
    {
      "author": "Snehit Prabhu and Itsik Pe'er",
      "title": "Overlapping Pools for High Throughput Targeted Resequencing",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 270-270, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "270-270",
      "proceedings_doi": "10.1007/978-3-642-02008-7_20",
      "journal": "Genome Research",
      "journal_title": "Overlapping pools for high-throughput targeted resequencing",
      "journal_authors": "Snehit Prabhu, Itsik Pe’er",
      "journal_issue_pages": "19(7): 1254-1261",
      "journal_year": "2009",
      "journal_doi": "10.1101/gr.088559.108"
    },
    {
      "author": "Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth, Niko Beerenwinkel",
      "title": "Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 271-284, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "271-284",
      "proceedings_doi": "10.1007/978-3-642-02008-7_21",
      "journal": "Journal of Computational Biology",
      "journal_title": "Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction",
      "journal_authors": "Osvaldo Zagordi, Lukas Geyrhofer, Volker Röth, Niko Beerenwinkel",
      "journal_issue_pages": "17(3): 417-428",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0164"
    },
    {
      "author": "Mathias Möhl, Sebastian Will, Rolf Backofen",
      "title": "Lifting Prediction to Alignment of RNA Pseudoknots",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 285-301, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "285-301",
      "proceedings_doi": "10.1007/978-3-642-02008-7_22",
      "journal": "Journal of Computational Biology",
      "journal_title": "Lifting Prediction to Alignment of RNA Pseudoknots",
      "journal_authors": "Mathias Möhl, Sebastian Will, Rolf Backofen",
      "journal_issue_pages": "17(3): 429-442",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0168"
    },
    {
      "author": "Mathieu Lavallée-Adam, Benoit Coulombe, Mathieu Blanchette",
      "title": "Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 302-320, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "302-320",
      "proceedings_doi": "10.1007/978-3-642-02008-7_23",
      "journal": "Journal of Computational Biology",
      "journal_title": "Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks",
      "journal_authors": "Mathieu Lavallée‐Adam, Benoit Coulombe, Mathieu Blanchette",
      "journal_issue_pages": "17(3): 443-457",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0165"
    },
    {
      "author": "Wei Zheng, Karl E. Griswold, Chris Bailey-Kellogg",
      "title": "Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 321-338, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "321-338",
      "proceedings_doi": "10.1007/978-3-642-02008-7_24",
      "journal": "Journal of Computational Biology",
      "journal_title": "Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination",
      "journal_authors": "Wei Zheng, Karl E. Griswold, Chris Bailey‐Kellogg",
      "journal_issue_pages": "17(3): 459-475",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0189"
    },
    {
      "author": "Jérôme Waldispühl, Charles W. O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger",
      "title": "Simultaneous Alignment and Folding of Protein Sequences",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 339-355, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "339-355",
      "proceedings_doi": "10.1007/978-3-642-02008-7_25",
      "journal": "Journal of Computational Biology",
      "journal_title": "Simultaneous Alignment and Folding of Protein Sequences",
      "journal_authors": "Jérôme Waldispühl, Charles W. O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger",
      "journal_issue_pages": "21(7): 477-491",
      "journal_year": "2014",
      "journal_doi": "10.1089/cmb.2013.0163"
    },
    {
      "author": "Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna",
      "title": "Shared Peptides in Mass Spectrometry Based Protein Quantification",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 356-371, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "356-371",
      "proceedings_doi": "10.1007/978-3-642-02008-7_26",
      "journal": "Journal of Computational Biology",
      "journal_title": "Accurate Mass Spectrometry Based Protein Quantification via Shared Peptides",
      "journal_authors": "Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steven P. Briggs, Vineet Bafna",
      "journal_issue_pages": "19(4): 337-348",
      "journal_year": "2012",
      "journal_doi": "10.1089/cmb.2009.0267"
    },
    {
      "author": "Benjamin J. Hescott, Maek D.M. Leiserson, Lenore J. Cowen, Donna K. Slonim",
      "title": "Evaluating Between-Pathway Models with Expression Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 372-385, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "372-385",
      "proceedings_doi": "10.1007/978-3-642-02008-7_27",
      "journal": "Journal of Computational Biology",
      "journal_title": "Evaluating Between-Pathway Models with Expression Data",
      "journal_authors": "Benjamin Hescott, Mark D.M. Leiserson, Thuc Duy Le, Donna K. Slonim",
      "journal_issue_pages": "17(3): 477-487",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0178"
    },
    {
      "author": "Krister M. Swenson, Vaibhav Rajan, Yu Lin, Bernard M.E. Moret",
      "title": "Sorting Signed Permutations by Inversions in O(n log n) Time",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 386-399, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "386-399",
      "proceedings_doi": "10.1007/978-3-642-02008-7_28",
      "journal": "Journal of Computational Biology",
      "journal_title": "Sorting Signed Permutations by Inversions in O ( n log n ) Time",
      "journal_authors": "Krister M. Swenson, Vaibhav Rajan, Yu Lin, Bernard M. E. Moret",
      "journal_issue_pages": "17(3): 489-501",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0184"
    },
    {
      "author": "Saket Navlakha, James White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford",
      "title": "Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 400-417, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "400-417",
      "proceedings_doi": "10.1007/978-3-642-02008-7_29",
      "journal": "Journal of Computational Biology",
      "journal_title": "Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information",
      "journal_authors": "Saket Navlakha, James R. White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford",
      "journal_issue_pages": "17(3): 503-516",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0173"
    },
    {
      "author": "Suzanne S. Sindi and Benjamin J. Raphael",
      "title": "Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 418-433, Springer, Cham.",
      "proceedings_volume": "5541",
      "proceedings_pages": "418-433",
      "proceedings_doi": "10.1007/978-3-642-02008-7_30",
      "journal": "Journal of Computational Biology",
      "journal_title": "Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data",
      "journal_authors": "Suzanne Sindi, Benjamin J. Raphael",
      "journal_issue_pages": "17(3): 517-531",
      "journal_year": "2010",
      "journal_doi": "10.1089/cmb.2009.0185"
    },
    {
      "author": "Sheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble",
      "title": "On the Relationship between DNA Periodicity and Local Chromatin Structure",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 434-450, Springer, Cham.",
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    },
    {
      "author": "Constantinos Daskalakis, Elchanan Mossel, Sebastien Roch",
      "title": "Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 451-465, Springer, Cham.",
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      "author": "Eun Yong Kang, Ilya Shpitser, Chun Ye, Eleazar Eskin",
      "title": "Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 466-481, Springer, Cham.",
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      "journal": "Journal of Computational Biology",
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    },
    {
      "author": "Hyun Min Kang, Noah A. Zaitlen, Buhm Han, Eleazar Eskin",
      "title": "An Adaptive and Memory Efficient Algorithm for Genotype Imputation",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 482-495, Springer, Cham.",
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      "journal": "Journal of Computational Biology",
      "journal_title": "EMINIM: An Adaptive and Memory-Efficient Algorithm for Genotype Imputation",
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    {
      "author": "Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter",
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      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2009. Lecture Notes in Computer Science, vol 5541, pp 496-511, Springer, Cham.",
      "proceedings_volume": "5541",
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    {
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      "journal": "Journal of Computational Biology",
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}