{ "title": "14th Annual International Conference on Research in Computational Molecular Biology", "location": "Lisbon, Portugal", "dates": "August 12 - 15, 2010", "pc_chair": "Bonnie Berger", "organization_committee": "Arlindo Oliveira (co-chair), Ana Teresa Freitas (co-chair), João Carriço, Alexandre Francisco, Paulo Fonseca, José Pereira Leal, Sara Madeira, Luís Rocha, Sara Silva, Susana Vinga", "keynotes": "Cecilia Arraiano, David Bartel, Isaac Kohane, Phil Kapranov, Norbert Perrimon, Mona Singh", "website": "https://recomb.org/recomb2010", "papers": [ { "author": "Nir Atias and Roded Sharan", "title": "An Algorithmic Framework for Predicting Side-Effects of Drugs", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 1-14, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "1-14", "proceedings_doi": "10.1007/978-3-642-12683-3_1", "journal": "Journal of Computational Biology", "journal_title": "An Algorithmic Framework for Predicting Side Effects of Drugs", "journal_authors": "Nir Atias, Roded Sharan", "journal_issue_pages": "18(3): 207-218", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0255" }, { "author": "Ferhat Ay and Tamer Kahveci", "title": "SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 15-30, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "15-30", "proceedings_doi": "10.1007/978-3-642-12683-3_2", "journal": "Journal of Computational Biology", "journal_title": "SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings", "journal_authors": "Ferhat Ay, Manolis Kellis, Tamer Kahveci", "journal_issue_pages": "18(3): 219-235", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0280" }, { "author": "Sivan Bercovici and Dan Geiger", "title": "Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 31-49, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "31-49", "proceedings_doi": "10.1007/978-3-642-12683-3_3", "journal": "Journal of Computational Biology", "journal_title": "Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA", "journal_authors": "Sivan Bercovici, Dan Geiger", "journal_issue_pages": "18(3): 237-249", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0250" }, { "author": "Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi", "title": "Pathway-Based Functional Analysis of Metagenomes", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 50-64, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "50-64", "proceedings_doi": "10.1007/978-3-642-12683-3_4", "journal": "Journal of Computational Biology", "journal_title": "Pathway-Based Functional Analysis of Metagenomes", "journal_authors": "Itai Sharon, Sivan Bercovici, Ron Y. Pinter, Tomer Shlomi", "journal_issue_pages": "18(3): 495-505", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0260" }, { "author": "José Caldas and Samuel Kaski", "title": "Hierarchical Generative Biclustering for MicroRNA Expression Analysis", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 65-79, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "65-79", "proceedings_doi": "10.1007/978-3-642-12683-3_5", "journal": "Journal of Computational Biology", "journal_title": "Hierarchical Generative Biclustering for MicroRNA Expression Analysis", "journal_authors": "José Caldas, Samuel Kaski", "journal_issue_pages": "18(3): 251-261", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0256" }, { "author": "Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk", "title": "Subnetwork State Functions Define Dysregulated Subnetworks in Cancer", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 80-95, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "80-95", "proceedings_doi": "10.1007/978-3-642-12683-3_6", "journal": "Journal of Computational Biology", "journal_title": "Subnetwork State Functions Define Dysregulated Subnetworks in Cancer", "journal_authors": "Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk", "journal_issue_pages": "18(3): 263-281", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0269" }, { "author": "Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann", "title": "Proteome Coverage Prediction for Integrated Proteomics Datasets", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 96-109, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "96-109", "proceedings_doi": "10.1007/978-3-642-12683-3_7", "journal": "Journal of Computational Biology", "journal_title": "Proteome Coverage Prediction for Integrated Proteomics Datasets", "journal_authors": "Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann", "journal_issue_pages": "18(3): 283-293", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0261" }, { "author": "Timothy Danford, Robin Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David Gifford", "title": "Discovering Regulatory Overlapping RNA Transcripts", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 110-122, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "110-122", "proceedings_doi": "10.1007/978-3-642-12683-3_8", "journal": "Journal of Computational Biology", "journal_title": "Discovering Regulatory Overlapping RNA Transcripts", "journal_authors": "Timothy Danford, Robin D. Dowell, Sudeep D. Agarwala, Paula Grisafi, Gerald R. Fink, David K. Gifford", "journal_issue_pages": "18(3): 295-303", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0267" }, { "author": "Constantinos Daskalakis and Sebastien Roch", "title": "Alignment-Free Phylogenetic Reconstruction", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 123-137, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "123-137", "proceedings_doi": "10.1007/978-3-642-12683-3_9", "preprint_id": "arXiv:1109.5002", "preprint_doi": "10.48550/arXiv.1109.5002", "journal": "The Annals of Applied Probability", "journal_title": "Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis", "journal_authors": "Constantinos Daskalakis, Sebastien Roch", "journal_issue_pages": "23(2): 693-721", "journal_year": "2013", "journal_doi": "10.1214/12-aap852" }, { "author": "Jianxing Feng, Wei Li, Tao Jiang", "title": "Inference of Isoforms from Short Sequence Reads", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 138-157, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "138-157", "proceedings_doi": "10.1007/978-3-642-12683-3_10", "journal": "Journal of Computational Biology", "journal_title": "Inference of Isoforms from Short Sequence Reads", "journal_authors": "Jianxing Feng, Wei Li, Tao Jiang", "journal_issue_pages": "18(3): 305-321", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0243" }, { "author": "Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail", "title": "The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 158-173, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "158-173", "proceedings_doi": "10.1007/978-3-642-12683-3_11", "journal": "Journal of Computational Biology", "journal_title": "The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS", "journal_authors": "Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail", "journal_issue_pages": "18(3): 323-333", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0288" }, { "author": "Michael Hirsch, Bernhard Schölkopf, Michael Habeck", "title": "A New Algorithm for Improving the Resolution of Cryo-EM Density Maps", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 174-188, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "174-188", "proceedings_doi": "10.1007/978-3-642-12683-3_12", "journal": "Journal of Computational Biology", "journal_title": "A Blind Deconvolution Approach for Improving the Resolution of Cryo-EM Density Maps", "journal_authors": "Michael Hirsch, Bernhard Schölkopf, Michael Habeck", "journal_issue_pages": "18(3): 335-346", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0264" }, { "author": "Richard Jang, Xin Gao, Ming Li", "title": "Towards Automated Structure-Based NMR Resonance Assignment", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 189-207, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "189-207", "proceedings_doi": "10.1007/978-3-642-12683-3_13", "journal": "Journal of Computational Biology", "journal_title": "Towards Fully Automated Structure-Based NMR Resonance Assignment of 15 N-Labeled Proteins From Automatically Picked Peaks", "journal_authors": "Richard Jang, Xin Gao, Ming Li", "journal_issue_pages": "18(3): 347-363", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0251" }, { "author": "Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner", "title": "Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 208-232, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "208-232", "proceedings_doi": "10.1007/978-3-642-12683-3_14", "journal": "Molecular & Cellular Proteomics", "journal_title": "Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra", "journal_authors": "Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner", "journal_issue_pages": "10(6): M110.002220", "journal_year": "2011", "journal_doi": "10.1074/mcp.m110.002220" }, { "author": "Wei-Chun Kao and Yun S. Song", "title": "naive BayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 233-247, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "233-247", "proceedings_doi": "10.1007/978-3-642-12683-3_15", "journal": "Journal of Computational Biology", "journal_title": "naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing", "journal_authors": "Wei‐Chun Kao, Yun S. Song", "journal_issue_pages": "18(3): 365-377", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0247" }, { "author": "David R. Kelley and Carl Kingsford", "title": "Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 248-262, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "248-262", "proceedings_doi": "10.1007/978-3-642-12683-3_16", "journal": "Journal of Computational Biology", "journal_title": "Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression", "journal_authors": "David R. Kelley, Carl Kingsford", "journal_issue_pages": "18(3): 379-390", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0268" }, { "author": "Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka", "title": "Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 263-280, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "263-280", "proceedings_doi": "10.1007/978-3-642-12683-3_17" }, { "author": "Geoffrey Koh, David Hsu, P.S. Thiagarajan", "title": "Incremental Signaling Pathway Modeling by Data Integration", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 281-296, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "281-296", "proceedings_doi": "10.1007/978-3-642-12683-3_18" }, { "author": "Adam Kowalczyk, Justin Bedo, Thomas Conway, Bryan Beresford-Smith", "title": "The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 297-309, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "297-309", "proceedings_doi": "10.1007/978-3-642-12683-3_19", "journal": "Journal of Computational Biology", "journal_title": "The Poisson Margin Test for Normalization-Free Significance Analysis of NGS Data", "journal_authors": "Adam Kowalczyk, Justin Bedő, Thomas Conway, Bryan Beresford‐Smith", "journal_issue_pages": "18(3): 391-400", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0272" }, { "author": "Christos Kozanitis, Chris Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese", "title": "Compressing Genomic Sequence Fragments Using SlimGene", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 310-324, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "310-324", "proceedings_doi": "10.1007/978-3-642-12683-3_20", "journal": "Journal of Computational Biology", "journal_title": "Compressing Genomic Sequence Fragments Using SlimG ene", "journal_authors": "Christos Kozanitis, Christopher T. Saunders, Semyon Kruglyak, Vineet Bafna, Varghese George", "journal_issue_pages": "18(3): 401-413", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0253" }, { "author": "Fumei Lam, Charles H. Langley, Yun S. Song", "title": "On the Genealogy of Asexual Diploids", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 325-340, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "325-340", "proceedings_doi": "10.1007/978-3-642-12683-3_21", "journal": "Journal of Computational Biology", "journal_title": "On the Genealogy of Asexual Diploids", "journal_authors": "Fumei Lam, Charles H. Langley, Yun S. Song", "journal_issue_pages": "18(3): 415-428", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0270" }, { "author": "Jonathan Laserson, Vladimir Jojic, Daphne Koller", "title": "Genovo: De Novo Assembly for Metagenomes", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 341-356, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "341-356", "proceedings_doi": "10.1007/978-3-642-12683-3_22", "journal": "Journal of Computational Biology", "journal_title": "Genovo: De Novo Assembly for Metagenomes", "journal_authors": "Jonathan Laserson, Vladimir Jojic, Daphne Koller", "journal_issue_pages": "18(3): 429-443", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0244" }, { "author": "Seunghak Lee, Eric Xing, Michael Brudno", "title": "MOGUL: Detecting Common Insertions and Deletions in a Population", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 357-368, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "357-368", "proceedings_doi": "10.1007/978-3-642-12683-3_23" }, { "author": "Navodit Misra, Guy Blelloch, R. Ravi, Russell Schwartz", "title": "Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 369-383, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "369-383", "proceedings_doi": "10.1007/978-3-642-12683-3_24", "journal": "Journal of Computational Biology", "journal_title": "Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-State Phylogeny", "journal_authors": "Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz", "journal_issue_pages": "18(3): 445-457", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0254" }, { "author": "Laurent Noé, Marta Gîrdea, Gregory Kucherov", "title": "Seed Design Framework for Mapping SOLID Reads", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 384-396, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "384-396", "proceedings_doi": "10.1007/978-3-642-12683-3_25" }, { "author": "Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin", "title": "Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 397-409, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "397-409", "proceedings_doi": "10.1007/978-3-642-12683-3_26", "journal": "Journal of Computational Biology", "journal_title": "Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments", "journal_authors": "Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin", "journal_issue_pages": "18(3): 459-468", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0259" }, { "author": "Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler", "title": "Cactus Graphs for Genome Comparisons", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 410-425, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "410-425", "proceedings_doi": "10.1007/978-3-642-12683-3_27", "journal": "Journal of Computational Biology", "journal_title": "Cactus Graphs for Genome Comparisons", "journal_authors": "Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard Suh, David Haussler", "journal_issue_pages": "18(3): 469-481", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0252" }, { "author": "Yu Peng, Henry C.M. Leung, S.M. Yiu, Francis Y.L. Chin", "title": "IDBA A Practical Iterative de Bruijn Graph De Novo Assembler", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 426-440, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "426-440", "proceedings_doi": "10.1007/978-3-642-12683-3_28" }, { "author": "Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble", "title": "Predicting Nucleosome Positioning Using Multiple Evidence Tracks", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 441-455, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "441-455", "proceedings_doi": "10.1007/978-3-642-12683-3_29" }, { "author": "Barna Saha, Allison Hoch, Samir Khuller, Louiga Raschid, Xiao-Ning Zhang", "title": "Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 456-472, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "456-472", "proceedings_doi": "10.1007/978-3-642-12683-3_30" }, { "author": "Raheleh Salari, Mathias Möhl, Sebastian Will, S. Cenk Sahinalp, Rolf Backofen", "title": "Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 473-490, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "473-490", "proceedings_doi": "10.1007/978-3-642-12683-3_31" }, { "author": "Manu N. Setty, Alexander Gusev, Itsik Pe'er", "title": "HLA Type Inference via Haplotypes Identical by Descent", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 491-505, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "491-505", "proceedings_doi": "10.1007/978-3-642-12683-3_32", "journal": "Journal of Computational Biology", "journal_title": "HLA Type Inference via Haplotypes Identical by Descent", "journal_authors": "Manu Setty, Alexander Gusev, Itsik Pe’er", "journal_issue_pages": "18(3): 483-493", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0258" }, { "author": "Fabio Vandin, Eli Upfal, Benjamin J. Raphael", "title": "Algorithms for Detecting Significantly Mutated Pathways in Cancer", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 506-521, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "506-521", "proceedings_doi": "10.1007/978-3-642-12683-3_33", "journal": "Journal of Computational Biology", "journal_title": "Algorithms for Detecting Significantly Mutated Pathways in Cancer", "journal_authors": "Fabio Vandin, Eli Upfal, Benjamin J. Raphael", "journal_issue_pages": "18(3): 507-522", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0265" }, { "author": "Christian Widmer, Jose Leiva, Yasemin Altun, Gunnar Rätsch", "title": "Leveraging Sequence Classification by Taxonomy-Based Multitask Learning", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 522-534, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "522-534", "proceedings_doi": "10.1007/978-3-642-12683-3_34" }, { "author": "Yu-Wei Wu and Yuzhen Ye", "title": "A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using ℓ-Tuples", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 535-549, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "535-549", "proceedings_doi": "10.1007/978-3-642-12683-3_35", "journal": "Journal of Computational Biology", "journal_title": "A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using ℓ-tuples", "journal_authors": "Yu‐Wei Wu, Yuzhen Ye", "journal_issue_pages": "18(3): 523-534", "journal_year": "2011", "journal_doi": "10.1089/cmb.2010.0245" }, { "author": "Jianyang Zeng, Pei Zhou, Bruce Randall Donald", "title": "A Markov Random Field Framework for Protein Side-Chain Resonance Assignment", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 550-570, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "550-570", "proceedings_doi": "10.1007/978-3-642-12683-3_36" }, { "author": "Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham", "title": "Genomic DNA k-mer Spectra: Models and Modalities", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 571-571, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "571-571", "proceedings_doi": "10.1007/978-3-642-12683-3_37", "journal": "Genome Biology", "journal_title": "Genomic DNA k-mer spectra: models and modalities", "journal_authors": "Benny Chor, D. Horn, Nick Goldman, Yaron Y. Levy, Tim Massingham", "journal_issue_pages": "10(10): R108", "journal_year": "2009", "journal_doi": "10.1186/gb-2009-10-10-r108" }, { "author": "Richard Goldstein, Mario dos Reis, Asif Tamuri, Alan Hay", "title": "Deciphering the Swine-Flu Pandemics of 1918 and 2009", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. Lecture Notes in Computer Science, vol 6044, pp 572-573, Springer, Cham.", "proceedings_volume": "6044", "proceedings_pages": "572-573", "proceedings_doi": "10.1007/978-3-642-12683-3_38" }, { "author": "Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk", "title": "Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2010. 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