{ "title": "16th Annual International Conference on Research in Computational Molecular Biology", "location": "Barcelona, Spain", "dates": "April 21 - 24, 2012", "pc_chair": "Benny Chor", "organization_committee": "Rodric Guigo (chair), Josep F Abril, Francisco Cámara, Eduardo Eyras, Pedro Ferreira, Toni Gabaldón, Cédric Notredame, Gabriel Valiente, Blanka Wysocka", "keynotes": "Richard Durbin, Eileen Furlong, Thomas Gingeras, Alfonso Valencia, Ada E. Yonath", "website": "https://recomb.org/recomb2012/", "papers": [ { "author": "Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li", "title": "Protein Structure by Semidefinite Facial Reduction", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 1-11, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "1-11", "proceedings_doi": "10.1007/978-3-642-29627-7_1" }, { "author": "Sivan Bercovici, Jesse M. Rodriguez, Megan Elmore, Serafim Batzoglou", "title": "Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 12-28, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "12-28", "proceedings_doi": "10.1007/978-3-642-29627-7_2", "journal": "Journal of Computational Biology", "journal_title": "Ancestry Inference in Complex Admixtures via Variable-length Markov Chain Linkage Models", "journal_authors": "Jesse M. Rodriguez, Sivan Bercovici, Megan Elmore, Serafim Batzoglou", "journal_issue_pages": "20(3): 199-211", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0088" }, { "author": "Stefan Canzar, Mohammed El-Kebir, Rene Pool, Khaled Elbassioni, Alpesh K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau", "title": "Charge Group Partitioning in Biomolecular Simulation", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 29-43, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "29-43", "proceedings_doi": "10.1007/978-3-642-29627-7_3", "journal": "Journal of Computational Biology", "journal_title": "Charge Group Partitioning in Biomolecular Simulation", "journal_authors": "Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled Elbassioni, Alpeshkumar K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau", "journal_issue_pages": "20(3): 188-198", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0239" }, { "author": "Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu", "title": "Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 45-59, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "45-59", "proceedings_doi": "10.1007/978-3-642-29627-7_5", "journal": "Journal of Computational Biology", "journal_title": "Accuracy Estimation and Parameter Advising for Protein Multiple Sequence Alignment", "journal_authors": "John Kececioglu, Dan DeBlasio", "journal_issue_pages": "20(4): 259-279", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0007" }, { "author": "Matthew R. Francis and Elana J. Fertig", "title": "Quantifying the Dynamics of Coupled Networks of Switches and Oscillators", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 60-61, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "60-61", "proceedings_doi": "10.1007/978-3-642-29627-7_6", "preprint_id": "arXiv:1111.7243", "preprint_doi": "10.48550/arXiv.1111.7243", "journal": "PLoS ONE", "journal_title": "Quantifying the Dynamics of Coupled Networks of Switches and Oscillators", "journal_authors": "Matthew R. Francis, Elana J. Fertig", "journal_issue_pages": "7(1): e29497", "journal_year": "2012", "journal_doi": "10.1371/journal.pone.0029497" }, { "author": "Melissa Gymrek, David Golan, Saharon Rosset, Yaniv Erlich", "title": "lobSTR: A Short Tandem Repeat Profiler for Personal Genomes", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 62-63, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "62-63", "proceedings_doi": "10.1007/978-3-642-29627-7_7", "journal": "Genome Research", "journal_title": "lobSTR: A short tandem repeat profiler for personal genomes", "journal_authors": "Melissa Gymrek, David E. Golan, Saharon Rosset, Yaniv Erlich", "journal_issue_pages": "22(6): 1154-1162", "journal_year": "2012", "journal_doi": "10.1101/gr.135780.111" }, { "author": "Dan He, Buhm Han, Eleazar Eskin", "title": "Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 64-78, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "64-78", "proceedings_doi": "10.1007/978-3-642-29627-7_8", "journal": "Journal of Computational Biology", "journal_title": "Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data", "journal_authors": "Dan He, Buhm Han, Eleazar Eskin", "journal_issue_pages": "20(2): 80-92", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0091" }, { "author": "Lu He, Fabio Vandin, Gopal Pandurangan, Chris Bailey-Kellogg", "title": "BALLAST: A Ball-Based Algorithm for Structural Motifs", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 79-93, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "79-93", "proceedings_doi": "10.1007/978-3-642-29627-7_9", "journal": "Journal of Computational Biology", "journal_title": "Ballast : A Ball-based Algorithm for Structural Motifs", "journal_authors": "Lu He, Fabio Vandin, Gopal Pandurangan, Chris Bailey‐Kellogg", "journal_issue_pages": "20(2): 137-151", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0246" }, { "author": "Patrick Holloway, Krister Swenson, David Ardell, Nadia El-Mabrouk", "title": "Evolution of Genome Organization by Duplication and Loss: An Alignment Approach", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 94-112, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "94-112", "proceedings_doi": "10.1007/978-3-642-29627-7_10", "journal": "Journal of Computational Biology", "journal_title": "Ancestral Genome Organization: An Alignment Approach", "journal_authors": "Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk", "journal_issue_pages": "20(4): 280-295", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0292" }, { "author": "Daniel Holtby, Shuai Cheng Li, Ming Li", "title": "LoopWeaver Loop Modeling by the Weighted Scaling of Verified Proteins", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 113-126, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "113-126", "proceedings_doi": "10.1007/978-3-642-29627-7_11", "journal": "Journal of Computational Biology", "journal_title": "LoopWeaver: Loop Modeling by the Weighted Scaling of Verified Proteins", "journal_authors": "Daniel G. Holtby, Shuai Cheng Li, Ming Li", "journal_issue_pages": "20(3): 212-223", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0078" }, { "author": "Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu", "title": "A Robust Method for Transcript Quantification with RNA-seq Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 127-147, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "127-147", "proceedings_doi": "10.1007/978-3-642-29627-7_12", "journal": "Journal of Computational Biology", "journal_title": "A Robust Method for Transcript Quantification with RNA-Seq Data", "journal_authors": "Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu", "journal_issue_pages": "20(3): 167-187", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0230" }, { "author": "Marcus Kinsella and Vineet Bafna", "title": "Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 148-162, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "148-162", "proceedings_doi": "10.1007/978-3-642-29627-7_13", "journal": "Journal of Computational Biology", "journal_title": "Combinatorics of the Breakage-Fusion-Bridge Mechanism", "journal_authors": "Marcus Kinsella, Vineet Bafna", "journal_issue_pages": "19(6): 662-678", "journal_year": "2012", "journal_doi": "10.1089/cmb.2012.0020" }, { "author": "Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma", "title": "TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 163-164, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "163-164", "proceedings_doi": "10.1007/978-3-642-29627-7_14", "journal": "Nucleic Acids Research", "journal_title": "TrueSight: a new algorithm for splice junction detection using RNA-seq", "journal_authors": "Yang Li, Hongmei Li‐Byarlay, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma", "journal_issue_pages": "41(4): e51", "journal_year": "2012", "journal_doi": "10.1093/nar/gks1311" }, { "author": "Yaw-Ling Lin, Charles Ward, Steven Skiena", "title": "Synthetic Sequence Design for Signal Location Search", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 165-179, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "165-179", "proceedings_doi": "10.1007/978-3-642-29627-7_15", "journal": "Algorithmica", "journal_title": "Synthetic Sequence Design for Signal Location Search", "journal_authors": "Yaw-Ling Lin, Charles B. Ward, Steven Skiena", "journal_issue_pages": "67(3): 368-383", "journal_year": "2013", "journal_doi": "10.1007/s00453-013-9760-9" }, { "author": "Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab Shah, Colin Collins, S. Cenk Sahinalp", "title": "Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 181-182, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "181-182", "proceedings_doi": "10.1007/978-3-642-29627-7_17", "journal": "Genome Research", "journal_title": "nFuse: Discovery of complex genomic rearrangements in cancer using high-throughput sequencing", "journal_authors": "Andrew McPherson, Chunxiao Wu, Alexander W. Wyatt, Sohrab P. Shah, Colin C. Collins, S. Cenk Sahinalp", "journal_issue_pages": "22(11): 2250-2261", "journal_year": "2012", "journal_doi": "10.1101/gr.136572.111" }, { "author": "Andrew S. Parker, Karl E. Griswold, Chris Bailey-Kellogg", "title": "Structure-Guided Deimmunization of Therapeutic Proteins", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 184-198, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "184-198", "proceedings_doi": "10.1007/978-3-642-29627-7_19", "journal": "Journal of Computational Biology", "journal_title": "Structure-Guided Deimmunization of Therapeutic Proteins", "journal_authors": "Andrew S. Parker, Yoonjoo Choi, Karl E. Griswold, Chris Bailey‐Kellogg", "journal_issue_pages": "20(2): 152-165", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0251" }, { "author": "Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev", "title": "Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 200-212, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "200-212", "proceedings_doi": "10.1007/978-3-642-29627-7_21", "journal": "Journal of Computational Biology", "journal_title": "Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly", "journal_authors": "Son Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev", "journal_issue_pages": "20(4): 359-371", "journal_year": "2012", "journal_doi": "10.1089/cmb.2012.0098" }, { "author": "Imran Rauf, Florian Rasche, François Nicolas, Sebastian Böcker", "title": "Finding Maximum Colorful Subtrees in Practice", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 213-223, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "213-223", "proceedings_doi": "10.1007/978-3-642-29627-7_22", "journal": "Journal of Computational Biology", "journal_title": "Finding Maximum Colorful Subtrees in Practice", "journal_authors": "Imran Rauf, Florian Rasche, François Nicolas, Sebastian Böcker", "journal_issue_pages": "20(4): 311-321", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0083" }, { "author": "Sebastien Roch and Sagi Snir", "title": "Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 224-238, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "224-238", "proceedings_doi": "10.1007/978-3-642-29627-7_23", "preprint_id": "arXiv:1206.3520", "preprint_doi": "10.48550/arXiv.1206.3520" }, { "author": "Sayed Mohammad Ebrahim Sahraeian and Byung-Jun Yoon", "title": "RESQUE: Network Reduction Using Semi-Markov Random Walk Scores for Efficient Querying of Biological Networks", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 239-240, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "239-240", "proceedings_doi": "10.1007/978-3-642-29627-7_24", "journal": "Bioinformatics", "journal_title": "RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks", "journal_authors": "Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon", "journal_issue_pages": "28(16): 2129-2136", "journal_year": "2012", "journal_doi": "10.1093/bioinformatics/bts341" }, { "author": "Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka", "title": "Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 241-243, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "241-243", "proceedings_doi": "10.1007/978-3-642-29627-7_25" }, { "author": "Christina Schmiedl, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Sebastian Will, Rolf Backofen", "title": "Exact Pattern Matching for RNA Structure Ensembles", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 245-260, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "245-260", "proceedings_doi": "10.1007/978-3-642-29627-7_27" }, { "author": "Roded Sharan and Richard M. Karp", "title": "Reconstructing Boolean Models of Signaling", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 261-271, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "261-271", "proceedings_doi": "10.1007/978-3-642-29627-7_28", "journal": "Journal of Computational Biology", "journal_title": "Reconstructing Boolean models of signaling", "journal_authors": "Roded Sharan and Richard M. Karp", "journal_issue_pages": "20(3):249-57", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0241" }, { "author": "Kai Song, Jie Ren, Zhiyuan Zhai, Xuemei Liu, Minghua Deng, Fengzhu Sun", "title": "Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 272-285, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "272-285", "proceedings_doi": "10.1007/978-3-642-29627-7_29", "journal": "Journal of Computational Biology", "journal_title": "Alignment-Free Sequence Comparison Based on Next-Generation Sequencing Reads", "journal_authors": "Kai Song, Jie Ren, Zhiyuan Zhai, Xuemei Liu, Minghua Deng, Fengzhu Sun", "journal_issue_pages": "20(2): 64-79", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0228" }, { "author": "Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani, Shao-Shan Carol Huang, Jennifer Chayes, Christian Borgs, Riccardo Zecchina, Ernest Fraenkel", "title": "Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 287-301, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "287-301", "proceedings_doi": "10.1007/978-3-642-29627-7_31", "journal": "Journal of Computational Biology", "journal_title": "Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem", "journal_authors": "Nurcan Tunçbağ, Alfredo Braunstein, Andrea Pagnani, Shao‐shan Carol Huang, Jennifer Chayes, Christian Borgs, Riccardo Zecchina, Ernest Fraenkel", "journal_issue_pages": "20(2): 124-136", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0092" }, { "author": "Hua Wang, Heng Huang, Chris Ding", "title": "Function-Function Correlated Multi-Label Protein Function Prediction over Interaction Networks", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 302-313, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "302-313", "proceedings_doi": "10.1007/978-3-642-29627-7_32", "journal": "Journal of Computational Biology", "journal_title": "Function–Function Correlated Multi-label Protein Function Prediction over Interaction Networks", "journal_authors": "Hua Wang, Heng Huang, Chris Ding", "journal_issue_pages": "20(4): 322-343", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0272" }, { "author": "Hua Wang, Heng Huang, Chris Ding, Feiping Nie", "title": "Predicting Protein-Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 314-325, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "314-325", "proceedings_doi": "10.1007/978-3-642-29627-7_33", "journal": "Journal of Computational Biology", "journal_title": "Predicting Protein–Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization", "journal_authors": "Hua Wang, Heng Huang, Chris Ding, Feiping Nie", "journal_issue_pages": "20(4): 344-358", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0273" }, { "author": "Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin", "title": "CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 326-340, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "326-340", "proceedings_doi": "10.1007/978-3-642-29627-7_34", "journal": "Journal of Computational Biology", "journal_title": "CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping", "journal_authors": "Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin", "journal_issue_pages": "20(3): 224-236", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0258" }, { "author": "Sebastian Will, Michael Yu, Bonnie Berger", "title": "Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding RNAs", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 341-341, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "341-341", "proceedings_doi": "10.1007/978-3-642-29627-7_35", "journal": "Genome Research", "journal_title": "Structure-based whole-genome realignment reveals many novel noncoding RNAs", "journal_authors": "Sebastian Will, Michael Yu, Bonnie Berger", "journal_issue_pages": "23(6): 1018-1027", "journal_year": "2013", "journal_doi": "10.1101/gr.137091.111" }, { "author": "Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel", "title": "Probabilistic Inference of Viral Quasispecies Subject to Recombination", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 342-354, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "342-354", "proceedings_doi": "10.1007/978-3-642-29627-7_36", "journal": "Journal of Computational Biology", "journal_title": "Probabilistic Inference of Viral Quasispecies Subject to Recombination", "journal_authors": "Armin Töpfer, Osvaldo Zagordi, Sandhya Prabhakaran, Volker Röth, Eran Halperin, Niko Beerenwinkel", "journal_issue_pages": "20(2): 113-123", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0232" }, { "author": "ZhiZhuo Zhang, Cheng Wei Chang, Willy Hugo, Edwin Cheung, Wing-Kin Sung", "title": "Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2012. Lecture Notes in Computer Science, vol 7262, pp 355-370, Springer, Cham.", "proceedings_volume": "7262", "proceedings_pages": "355-370", "proceedings_doi": "10.1007/978-3-642-29627-7_37", "journal": "Journal of Computational Biology", "journal_title": "Simultaneously Learning DNA Motif Along with Its Position and Sequence Rank Preferences Through Expectation Maximization Algorithm", "journal_authors": "Zhizhuo Zhang, Cheng Chang, Willy Hugo, Edwin Cheung, Wing‐Kin Sung", "journal_issue_pages": "20(3): 237-248", "journal_year": "2013", "journal_doi": "10.1089/cmb.2012.0233" } ] }