{ "title": "17th Annual International Conference on Research in Computational Molecular Biology", "location": "Beijing, China", "dates": "April 7 - 10, 2013", "pc_chair": "Fengzhu Sun", "organization_committee": "Xuegong Zhang (co-chair), Minghua Deng (co-chair), Rui Jiang (co-chair), Jin Gu, Jingdong Han, Ruiqiang Li, Xuan Li, Yixue Li, Jingchu Luo, Geng Tian, Xiujie Wang, Peiheng Zhang", "keynotes": "Scott Fraser, Takashi Gojobori, Deborah Nickerson, Nadia A. Rosenthal, Chung-I Wu, Sunny Xie", "website": "https://recomb.org/recomb2013/", "papers": [ { "author": "Mukul S. Bansal, Eric J. Alm, Manolis Kellis", "title": "Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 1-13, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "1-13", "proceedings_doi": "10.1007/978-3-642-37195-0_1", "journal": "Journal of Computational Biology", "journal_title": "Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss", "journal_authors": "Mukul S. Bansal, Eric J. Alm, Manolis Kellis", "journal_issue_pages": "20(10): 738-754", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0073" }, { "author": "Shijian Chen, Anqi Wang, Lei M. Li", "title": "SEME: A Fast Mapper of Illumina Sequencing Reads with Statistical Evaluation", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 14-29, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "14-29", "proceedings_doi": "10.1007/978-3-642-37195-0_2", "journal": "Journal of Computational Biology", "journal_title": "SEME: A Fast Mapper of Illumina Sequencing Reads with Statistical Evaluation", "journal_authors": "Shijian Chen, Anqi Wang, Lei M. Li", "journal_issue_pages": "20(11): 847-860", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0111" }, { "author": "Dong-Yeon Cho and Teresa M. Przytycka", "title": "Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 30-31, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "30-31", "proceedings_doi": "10.1007/978-3-642-37195-0_3", "journal": "Nucleic Acids Research", "journal_title": "Dissecting cancer heterogeneity with a probabilistic genotype-phenotype model", "journal_authors": "Dong-Yeon Cho, Teresa M. Przytycka", "journal_issue_pages": "41(17): 8011-8020", "journal_year": "2013", "journal_doi": "10.1093/nar/gkt577" }, { "author": "Itamar Eskin, Farhad Hormozdiari, Lucia Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin", "title": "eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 32-44, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "32-44", "proceedings_doi": "10.1007/978-3-642-37195-0_4", "journal": "Journal of Computational Biology", "journal_title": "eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data", "journal_authors": "Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Christine F. Skibola, Eleazar Eskin, Eran Halperin", "journal_issue_pages": "20(11): 861-877", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0105" }, { "author": "Ali A. Faruqi, William A. Bryant, John W. Pinney", "title": "Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 45-57, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "45-57", "proceedings_doi": "10.1007/978-3-642-37195-0_5", "journal": "Journal of Computational Biology", "journal_title": "Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models", "journal_authors": "William A Bryant, Ali A. Faruqi, John W. Pinney", "journal_issue_pages": "20(10): 755-764", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0079" }, { "author": "Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang", "title": "Detecting Protein Conformational Changes in Interactions via Scaling Known Structures", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 58-74, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "58-74", "proceedings_doi": "10.1007/978-3-642-37195-0_6", "journal": "Journal of Computational Biology", "journal_title": "Detecting Protein Conformational Changes in Interactions via Scaling Known Structures", "journal_authors": "Fei Guo, Shuai Cheng Li, Wenji Ma, Lusheng Wang", "journal_issue_pages": "20(10): 765-779", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0069" }, { "author": "Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin", "title": "IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 75-87, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "75-87", "proceedings_doi": "10.1007/978-3-642-37195-0_7", "journal": "Journal of Computational Biology", "journal_title": "IPED: Inheritance Path-based Pedigree Reconstruction Algorithm Using Genotype Data", "journal_authors": "Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin", "journal_issue_pages": "20(10): 780-791", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0080" }, { "author": "Jesper Jansson, Chuanqi Shen, Wing-Kin Sung", "title": "An Optimal Algorithm for Building the Majority Rule Consensus Tree", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 88-99, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "88-99", "proceedings_doi": "10.1007/978-3-642-37195-0_8" }, { "author": "Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner", "title": "UniNovo: A Universal Tool for de Novo Peptide Sequencing", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 100-117, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "100-117", "proceedings_doi": "10.1007/978-3-642-37195-0_9", "journal": "Bioinformatics", "journal_title": "UniNovo: a universal tool for de novo peptide sequencing", "journal_authors": "Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner", "journal_issue_pages": "29(16): 1953-1962", "journal_year": "2013", "journal_doi": "10.1093/bioinformatics/btt338" }, { "author": "Emrah Kostem and Eleazar Eskin", "title": "Efficiently Identifying Significant Associations in Genome-Wide Association Studies", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 118-131, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "118-131", "proceedings_doi": "10.1007/978-3-642-37195-0_10", "journal": "Journal of Computational Biology", "journal_title": "Efficiently Identifying Significant Associations in Genome-wide Association Studies", "journal_authors": "Emrah Kostem, Eleazar Eskin", "journal_issue_pages": "20(10): 817-830", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0087" }, { "author": "Xiaowen Liu, Shawna Hengel, Si Wu, Nikola Tolić, Ljiljana Pasa-Tolić, Pavel A. Pevzner", "title": "Identification of Ultramodified Proteins Using Top-Down Spectra", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 132-144, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "132-144", "proceedings_doi": "10.1007/978-3-642-37195-0_11", "journal": "Journal of Proteome Research", "journal_title": "Identification of Ultramodified Proteins Using Top-Down Tandem Mass Spectra", "journal_authors": "Xiaowen Liu, Shawna Hengel, Si Wu, Nikola Tolić, Ljiljana Paša‐Tolić, Pavel A. Pevzner", "journal_issue_pages": "12(12): 5830-5838", "journal_year": "2013", "journal_doi": "10.1021/pr400849y" }, { "author": "Alina Munteanu and Raluca Gordân", "title": "Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 145-157, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "145-157", "proceedings_doi": "10.1007/978-3-642-37195-0_12" }, { "author": "Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner", "title": "Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 158-170, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "158-170", "proceedings_doi": "10.1007/978-3-642-37195-0_13", "journal": "Journal of Computational Biology", "journal_title": "Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products", "journal_authors": "Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey D. Prjibelski, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramūnas Stepanauskas, Scott Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger S. Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner", "journal_issue_pages": "20(10): 714-737", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0084" }, { "author": "Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael", "title": "Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 171-172, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "171-172", "proceedings_doi": "10.1007/978-3-642-37195-0_14", "journal": "Genome Biology", "journal_title": "THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data", "journal_authors": "Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael", "journal_issue_pages": "14(7): R80", "journal_year": "2013", "journal_doi": "10.1186/gb-2013-14-7-r80" }, { "author": "Kriti Puniyani and Eric P. Xing", "title": "NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 173-185, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "173-185", "proceedings_doi": "10.1007/978-3-642-37195-0_15", "journal": "Journal of Computational Biology", "journal_title": "NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources", "journal_authors": "Kriti Puniyani, Eric P. Xing", "journal_issue_pages": "20(11): 892-904", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0093" }, { "author": "Christopher Reeder and David Gifford", "title": "High Resolution Modeling of Chromatin Interactions", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 186-198, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "186-198", "proceedings_doi": "10.1007/978-3-642-37195-0_16" }, { "author": "Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl", "title": "A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 199-211, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "199-211", "proceedings_doi": "10.1007/978-3-642-37195-0_17", "journal": "Journal of Computational Biology", "journal_title": "Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs", "journal_authors": "Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl", "journal_issue_pages": "20(11): 905-919", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0085" }, { "author": "Jesse M. Rodriguez, Serafim Batzoglou, Sivan Bercovici", "title": "An Accurate Method for Inferring Relatedness in Large Datasets of Unphased Genotypes via an Embedded Likelihood-Ratio Test", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 212-229, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "212-229", "proceedings_doi": "10.1007/978-3-642-37195-0_18" }, { "author": "Roy Ronen, Nitin Udpa, Eran Halperin, Vineet Bafna", "title": "Learning Natural Selection from the Site Frequency Spectrum", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 230-233, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "230-233", "proceedings_doi": "10.1007/978-3-642-37195-0_19", "journal": "Genetics", "journal_title": "Learning Natural Selection from the Site Frequency Spectrum", "journal_authors": "Roy Ronen, Nitin Udpa, Eran Halperin, Vineet Bafna", "journal_issue_pages": "195(1): 181-193", "journal_year": "2013", "journal_doi": "10.1534/genetics.113.152587" }, { "author": "Mohammad Javad Sadeh, Giusi Moffa, Rainer Spang", "title": "Considering Unknown Unknowns - Reconstruction of Non-confoundable Causal Relations in Biological Networks", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 234-248, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "234-248", "proceedings_doi": "10.1007/978-3-642-37195-0_20", "journal": "Journal of Computational Biology", "journal_title": "Considering Unknown Unknowns: Reconstruction of Nonconfoundable Causal Relations in Biological Networks", "journal_authors": "Mohammad J. Sadeh, Giusi Moffa, Rainer Spang", "journal_issue_pages": "20(11): 920-932", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0119" }, { "author": "Raheleh Salari, Syed Shayon Saleh, Dorna Kashef-Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou", "title": "Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 249-263, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "249-263", "proceedings_doi": "10.1007/978-3-642-37195-0_21", "journal": "Journal of Computational Biology", "journal_title": "Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery", "journal_authors": "Raheleh Salari, Syed Shayon Saleh, Dorna Kashef-Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou", "journal_issue_pages": "20(11): 933-944", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0106" }, { "author": "Evan Senter, Saad Sheikh, Ivan Dotu, Yann Ponty, Peter Clote", "title": "Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 264-265, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "264-265", "proceedings_doi": "10.1007/978-3-642-37195-0_22", "journal": "PLoS ONE", "journal_title": "Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches", "journal_authors": "Evan Senter, Saad Sheikh, Iván Dotú, Yann Ponty, Peter Clote", "journal_issue_pages": "7(12): e50506", "journal_year": "2012", "journal_doi": "10.1371/journal.pone.0050506" }, { "author": "Michael Stevens, Jeffrey B. Cheng, Mingchao Xie, Joseph F. Costello, Ting Wang", "title": "MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 266-268, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "266-268", "proceedings_doi": "10.1007/978-3-642-37195-0_23", "journal": "Genome Research", "journal_title": "Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods", "journal_authors": "Michael Stevens, Jeffrey B. Cheng, Daofeng Li, Mingchao Xie, Chibo Hong, Cécile L. Maire, Keith L. Ligon, Martin Hirst, Marco A. Marra, J Costello, Ting Wang", "journal_issue_pages": "23(9): 1541-1553", "journal_year": "2013", "journal_doi": "10.1101/gr.152231.112" }, { "author": "Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang", "title": "Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 269-270, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "269-270", "proceedings_doi": "10.1007/978-3-642-37195-0_24", "journal": "Nature Communications", "journal_title": "Counting motifs in the human interactome", "journal_authors": "Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang", "journal_issue_pages": "4: 2241", "journal_year": "2013", "journal_doi": "10.1038/ncomms3241" }, { "author": "Chittaranjan Tripathy, Anthony K. Yan, Pei Zhou, Bruce Randall Donald", "title": "Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 271-284, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "271-284", "proceedings_doi": "10.1007/978-3-642-37195-0_25" }, { "author": "Fabio Vandin, Alexandra Papoutsaki, Benjamin J. Raphael, Eli Upfal", "title": "Genome-Wide Survival Analysis of Somatic Mutations in Cancer", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 285-286, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "285-286", "proceedings_doi": "10.1007/978-3-642-37195-0_26" }, { "author": "Mingxun Wang and Nuno Bandeira", "title": "Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 287-288, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "287-288", "proceedings_doi": "10.1007/978-3-642-37195-0_27", "journal": "Journal of Proteome Research", "journal_title": "Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance", "journal_authors": "Mingxun Wang, Nuno Bandeira", "journal_issue_pages": "12(9): 3944-3951", "journal_year": "2013", "journal_doi": "10.1021/pr400230p" }, { "author": "Sebastian Will, Christina Schmiedl, Milad Miladi, Mathias Möhl, Rolf Backofen", "title": "SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 289-290, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "289-290", "proceedings_doi": "10.1007/978-3-642-37195-0_28", "journal": "Bioinformatics", "journal_title": "SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics", "journal_authors": "Sebastian Will, Christina Otto, Milad Miladi, Mathias Möhl, Rolf Backofen", "journal_issue_pages": "31(15): 2489-2496", "journal_year": "2015", "journal_doi": "10.1093/bioinformatics/btv185" }, { "author": "Yufeng Wu", "title": "An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 291-303, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "291-303", "proceedings_doi": "10.1007/978-3-642-37195-0_29", "journal": "Journal of Computational Biology", "journal_title": "An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees", "journal_authors": "Yufeng Wu", "journal_issue_pages": "20(10): 792-804", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0072" }, { "author": "Dong Xu, Hua Li, Yang Zhang", "title": "Fast and Accurate Calculation of Protein Depth by Euclidean Distance Transform", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 304-316, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "304-316", "proceedings_doi": "10.1007/978-3-642-37195-0_30", "journal": "Journal of Computational Biology", "journal_title": "Protein Depth Calculation and the Use for Improving Accuracy of Protein Fold Recognition", "journal_authors": "Dong Xu, Hua Li, Yang Zhang", "journal_issue_pages": "20(10): 805-816", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0071" }, { "author": "ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh, Wing-Kin Sung", "title": "Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 317-332, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "317-332", "proceedings_doi": "10.1007/978-3-642-37195-0_31", "journal": "Journal of Computational Biology", "journal_title": "3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data", "journal_authors": "Zhizhuo Zhang, Guoliang Li, Kim-Chuan Toh, Wing‐Kin Sung", "journal_issue_pages": "20(11): 831-846", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0076" }, { "author": "Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Shuigeng Zhou", "title": "Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2013. Lecture Notes in Computer Science, vol 7821, pp 333-344, Springer, Cham.", "proceedings_volume": "7821", "proceedings_pages": "333-344", "proceedings_doi": "10.1007/978-3-642-37195-0_32", "journal": "Journal of Computational Biology", "journal_title": "Boosting Prediction Performance of Protein–Protein Interaction Hot Spots by Using Structural Neighborhood Properties", "journal_authors": "Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou", "journal_issue_pages": "20(11): 878-891", "journal_year": "2013", "journal_doi": "10.1089/cmb.2013.0083" } ] }