{ "title": "19th Annual International Conference on Research in Computational Molecular Biology", "location": "Warsaw, Poland", "dates": "April 12 - 15, 2015", "pc_chair": "Teresa M. Przytycka", "organization_committee": "Jerzy Tiuryn (co-chair), Bartek Wilczyński (co-chair), Paweł Bednarz, Agata Charzyńska, Norbert Dojer, Anna Gambin, Paweł Górecki, Ilona Grabowicz, Julia Herman-Iżycka, Aleksander Jankowski, Agnieszka Mykowiecka, Ewa Szczurek, Irina Tuszyńska, Damian Wójtowicz, Rafał Zaborowski", "keynotes": "Madan Babu, Bonnie Berger, M. Magda Konarska, Michael Levitt, Bas van Steensel, Wacław Szybalski", "website": "https://recomb.org/recomb2015/", "papers": [ { "author": "Srinivas Aluru, Alberto Apostolico, Sharma V. Thankachan", "title": "Efficient Alignment Free Sequence Comparison with Bounded Mismatches", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 1-12, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "1-12", "proceedings_doi": "10.1007/978-3-319-16706-0_1", "journal": "Journal of Computational Biology", "journal_title": "A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem", "journal_authors": "Sharma V. Thankachan, Alberto Apostolico, Srinivas Aluru", "journal_issue_pages": "23(6): 472-482", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0235" }, { "author": "Naama Amir, Dan Cohen, Haim J. Wolfson", "title": "DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 13-15, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "13-15", "proceedings_doi": "10.1007/978-3-319-16706-0_2", "journal": "Bioinformatics", "journal_title": "DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes", "journal_authors": "Naama Amir, Dan Cohen, Haim J. Wolfson", "journal_issue_pages": "31(17): 2801-2807", "journal_year": "2015", "journal_doi": "10.1093/bioinformatics/btv270" }, { "author": "Ilan Ben-Bassat and Benny Chor", "title": "CRISPR Detection from Short Reads Using Partial Overlap Graphs", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 16-27, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "16-27", "proceedings_doi": "10.1007/978-3-319-16706-0_3", "journal": "Journal of Computational Biology", "journal_title": "CRISPR Detection From Short Reads Using Partial Overlap Graphs", "journal_authors": "Ilan Ben-Bassat, Benny Chor", "journal_issue_pages": "23(6): 461-471", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0226" }, { "author": "Emily Berger, Deniz Yorukoglu, Bonnie Berger", "title": "HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 28-29, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "28-29", "proceedings_doi": "10.1007/978-3-319-16706-0_4", "journal": "Nature Communications", "journal_title": "Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets", "journal_authors": "Emily R. Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Manolis Kellis, Ibrahim Numanagić, Bonnie Berger", "journal_issue_pages": "11: 4662", "journal_year": "2020", "journal_doi": "10.1038/s41467-020-18320-z" }, { "author": "Alex Bishara, Yuling Liu, Dorna Kashef-Haghighi, Ziming Weng, Daniel E. Newburger, Robert West, Arend Sidow, Serafim Batzoglou", "title": "Read Clouds Uncover Variation in Complex Regions of the Human Genome", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 30-31, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "30-31", "proceedings_doi": "10.1007/978-3-319-16706-0_5", "journal": "Genome Research", "journal_title": "Read clouds uncover variation in complex regions of the human genome", "journal_authors": "Alex Bishara, Yuling Liu, Ziming Weng, Dorna Kashef-Haghighi, Daniel E. Newburger, Robert West, Arend Sidow, Serafim Batzoglou", "journal_issue_pages": "25(10): 1570-1580", "journal_year": "2015", "journal_doi": "10.1101/gr.191189.115" }, { "author": "Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic", "title": "Learning Microbial Interaction Networks from Metagenomic Count Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 32-43, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "32-43", "proceedings_doi": "10.1007/978-3-319-16706-0_6", "preprint_id": "arXiv:1412.0207", "preprint_doi": "10.48550/arXiv.1412.0207", "journal": "Journal of Computational Biology", "journal_title": "Learning Microbial Interaction Networks from Metagenomic Count Data", "journal_authors": "Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic", "journal_issue_pages": "23(6): 526-535", "journal_year": "2016", "journal_doi": "10.1089/cmb.2016.0061" }, { "author": "Stefano R. Bonissone and Pavel A. Pevzner", "title": "Immunoglobulin Classification Using the Colored Antibody Graph", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 44-59, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "44-59", "proceedings_doi": "10.1007/978-3-319-16706-0_7", "journal": "Journal of Computational Biology", "journal_title": "Immunoglobulin Classification Using the Colored Antibody Graph", "journal_authors": "Stefano R. Bonissone, Pavel A. Pevzner", "journal_issue_pages": "23(6): 483-494", "journal_year": "2016", "journal_doi": "10.1089/cmb.2016.0010" }, { "author": "Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau", "title": "CIDANE: Comprehensive Isoform Discovery and Abundance Estimation", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 60-61, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "60-61", "proceedings_doi": "10.1007/978-3-319-16706-0_8", "journal": "Genome Biology", "journal_title": "CIDANE: comprehensive isoform discovery and abundance estimation", "journal_authors": "Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau", "journal_issue_pages": "17: 16", "journal_year": "2016", "journal_doi": "10.1186/s13059-015-0865-0" }, { "author": "Hyunghoon Cho, Bonnie Berger, Jian Peng", "title": "Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 62-64, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "62-64", "proceedings_doi": "10.1007/978-3-319-16706-0_9", "preprint_id": "arXiv:1504.02719", "preprint_doi": "10.48550/arXiv.1504.02719", "journal": "Cell Systems", "journal_title": "Compact Integration of Multi-Network Topology for Functional Analysis of Genes", "journal_authors": "Hyunghoon Cho, Bonnie Berger, Jian Peng", "journal_issue_pages": "3(6): 540-548", "journal_year": "2016", "journal_doi": "10.1016/j.cels.2016.10.017" }, { "author": "Kai Dührkop and Sebastian Böcker", "title": "Fragmentation Trees Reloaded", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 65-79, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "65-79", "proceedings_doi": "10.1007/978-3-319-16706-0_10", "preprint_id": "arXiv:1412.1929", "preprint_doi": "10.48550/arXiv.1412.1929", "journal": "Journal of Cheminformatics", "journal_title": "Fragmentation trees reloaded", "journal_authors": "Kai Dührkop, Sebastian Böcker", "journal_issue_pages": "8: 5", "journal_year": "2016", "journal_doi": "10.1186/s13321-016-0116-8" }, { "author": "Rasmus Fonseca, Henry van den Bedem, Julie Bernauer", "title": "KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 80-95, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "80-95", "proceedings_doi": "10.1007/978-3-319-16706-0_11", "journal": "Journal of Computational Biology", "journal_title": "Probing RNA Native Conformational Ensembles with Structural Constraints", "journal_authors": "Rasmus Fonseca, Henry van den Bedem, Julie Bernauer", "journal_issue_pages": "23(5): 362-371", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0201" }, { "author": "Philippe Gambette, Andreas D.M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang", "title": "Locating a Tree in a Phylogenetic Network in Quadratic Time", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 96-107, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "96-107", "proceedings_doi": "10.1007/978-3-319-16706-0_12", "preprint_id": "arXiv:1502.03379", "preprint_doi": "10.48550/arXiv.1502.03379" }, { "author": "Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng", "title": "Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 108-121, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "108-121", "proceedings_doi": "10.1007/978-3-319-16706-0_13", "journal": "Journal of Computational Biology", "journal_title": "Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data", "journal_authors": "Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng", "journal_issue_pages": "23(5): 300-310", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0184" }, { "author": "Mark A. Hallen and Bruce R. Donald", "title": "COMETS (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 122-135, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "122-135", "proceedings_doi": "10.1007/978-3-319-16706-0_14", "journal": "Journal of Computational Biology", "journal_title": "COMETS (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence", "journal_authors": "Mark A. Hallen, Bruce R. Donald", "journal_issue_pages": "23(5): 311-321", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0188" }, { "author": "Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nick Furlotte, Brian Parks, Aldons J. Lusis, Eleazar Eskin", "title": "Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 136-153, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "136-153", "proceedings_doi": "10.1007/978-3-319-16706-0_15", "journal": "Genetics", "journal_title": "Efficient and Accurate Multiple-Phenotype Regression Method for High Dimensional Data Considering Population Structure", "journal_authors": "Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nick Furlotte, Brian Parks, Farhad Hormozdiari, Aldons J. Lusis, Eleazar Eskin", "journal_issue_pages": "204(4):1379-1390", "journal_year": "2016", "journal_doi": "10.1534/genetics.116.189712" }, { "author": "Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce R. Donald", "title": "BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 154-166, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "154-166", "proceedings_doi": "10.1007/978-3-319-16706-0_16", "journal": "Journal of Computational Biology", "journal_title": "BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design", "journal_authors": "Jonathan D. Jou, Swati Jain, Ivelin S. Georgiev, Bruce R. Donald", "journal_issue_pages": "23(6): 413-424", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0194" }, { "author": "Seunghak Lee, Aurélie Lozano, Prabhanjan Kambadur, Eric P. Xing", "title": "An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 167-187, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "167-187", "proceedings_doi": "10.1007/978-3-319-16706-0_17", "journal": "Journal of Computational Biology", "journal_title": "An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations", "journal_authors": "Seunghak Lee, Aurélie C. Lozano, Prabhanjan Kambadur, Eric P. Xing", "journal_issue_pages": "23(5): 372-389", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0202" }, { "author": "Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski", "title": "Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 188-201, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "188-201", "proceedings_doi": "10.1007/978-3-319-16706-0_18", "journal": "Journal of Computational Biology", "journal_title": "Predicting Designability of Small Proteins from Graph Features of Contact Maps", "journal_authors": "Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski", "journal_issue_pages": "23(5): 400-411", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0209" }, { "author": "Mark D.M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael", "title": "CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 202-204, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "202-204", "proceedings_doi": "10.1007/978-3-319-16706-0_19", "journal": "Genome Biology", "journal_title": "CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer", "journal_authors": "Mark D.M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael", "journal_issue_pages": "16: 160", "journal_year": "2015", "journal_doi": "10.1186/s13059-015-0700-7" }, { "author": "Yifeng Li, Chih-Yu Chen, Wyeth W. Wasserman", "title": "Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 205-217, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "205-217", "proceedings_doi": "10.1007/978-3-319-16706-0_20", "journal": "Journal of Computational Biology", "journal_title": "Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters", "journal_authors": "Yifeng Li, Chih-Yu Chen, Wyeth W. Wasserman", "journal_issue_pages": "23(5): 322-336", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0189" }, { "author": "Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu", "title": "Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 218-221, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "218-221", "proceedings_doi": "10.1007/978-3-319-16706-0_21", "preprint_id": "arXiv:1312.2988", "preprint_doi": "10.48550/arXiv.1312.2988", "journal": "Bioinformatics", "journal_title": "Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning", "journal_authors": "Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu", "journal_issue_pages": "31(21): 3506-3513", "journal_year": "2015", "journal_doi": "10.1093/bioinformatics/btv472" }, { "author": "Igor Mandric and Alex Zelikovsky", "title": "ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 222-223, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "222-223", "proceedings_doi": "10.1007/978-3-319-16706-0_22", "journal": "Bioinformatics", "journal_title": "ScaffMatch: scaffolding algorithm based on maximum weight matching", "journal_authors": "Igor Mandric, Alex Zelikovsky", "journal_issue_pages": "31(16): 2632-2638", "journal_year": "2015", "journal_doi": "10.1093/bioinformatics/btv211" }, { "author": "David Manescu and Uri Keich", "title": "A Symmetric Length-Aware Enrichment Test", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 224-242, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "224-242", "proceedings_doi": "10.1007/978-3-319-16706-0_23", "journal": "Journal of Computational Biology", "journal_title": "A Symmetric Length-Aware Enrichment Test", "journal_authors": "David Manescu, Uri Keich", "journal_issue_pages": "23(6): 508-525", "journal_year": "2016", "journal_doi": "10.1089/cmb.2016.0038" }, { "author": "Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan", "title": "Functional Alignment of Metabolic Networks", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 243-255, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "243-255", "proceedings_doi": "10.1007/978-3-319-16706-0_24", "journal": "Journal of Computational Biology", "journal_title": "Functional Alignment of Metabolic Networks", "journal_authors": "Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan", "journal_issue_pages": "23(5): 390-399", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0203" }, { "author": "Andrew McPherson, Andrew Roth, Cedric Chauve, S. Cenk Sahinalp", "title": "Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 256-258, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "256-258", "proceedings_doi": "10.1007/978-3-319-16706-0_25", "preprint_id": "arXiv:1504.03080", "preprint_doi": "10.48550/arXiv.1504.03080", "journal": "Genome Biology", "journal_title": "ReMixT: clone-specific genomic structure estimation in cancer", "journal_authors": "Andrew W. McPherson, Andrew Roth, Gavin Ha, Cedric Chauve, Adi Steif, Camila P. E. de Souza, Peter Eirew, Alexandre Bouchard-Côté, Sam Aparicio, S. Cenk Sahinalp, Sohrab P. Shah", "journal_issue_pages": "18: 140", "journal_year": "2017", "journal_doi": "10.1186/s13059-017-1267-2" }, { "author": "Nam Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy Warnow", "title": "Ultra-Large Alignments Using Ensembles of Hidden Markov Models", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 259-260, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "259-260", "proceedings_doi": "10.1007/978-3-319-16706-0_26", "preprint_id": "arXiv:1504.01142", "preprint_doi": "10.48550/arXiv.1504.01142", "journal": "Genome Biology", "journal_title": "Ultra-large alignments using Phylogeny-aware Profiles", "journal_authors": "Nam-Phuong D. Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy Warnow", "journal_issue_pages": "16: 124", "journal_year": "2015", "journal_doi": "10.1186/s13059-015-0688-z" }, { "author": "Laxmi Parida, Filippo Utro, Deniz Yorukoglu, Anna Paola Carrieri, David Kuhn, Saugata Basu", "title": "Topological Signatures for Population Admixture", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 261-275, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "261-275", "proceedings_doi": "10.1007/978-3-319-16706-0_27" }, { "author": "Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna", "title": "Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 276-280, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "276-280", "proceedings_doi": "10.1007/978-3-319-16706-0_28", "journal": "PLOS Genetics", "journal_title": "Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele", "journal_authors": "Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna", "journal_issue_pages": "11(9): e1005527", "journal_year": "2015", "journal_doi": "10.1371/journal.pgen.1005527" }, { "author": "Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu", "title": "Gap Filling as Exact Path Length Problem", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 281-292, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "281-292", "proceedings_doi": "10.1007/978-3-319-16706-0_29", "journal": "Journal of Computational Biology", "journal_title": "Gap Filling as Exact Path Length Problem", "journal_authors": "Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu", "journal_issue_pages": "23(5): 347-361", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0197" }, { "author": "Emre Sefer, Geet Duggal, Carl Kingsford", "title": "Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 293-308, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "293-308", "proceedings_doi": "10.1007/978-3-319-16706-0_30", "journal": "Journal of Computational Biology", "journal_title": "Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations", "journal_authors": "Emre Sefer, Geet Duggal, Carl Kingsford", "journal_issue_pages": "23(6): 425-438", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0210" }, { "author": "Mingfu Shao and Bernard M.E. Moret", "title": "A Fast and Exact Algorithm for the Exemplar Breakpoint Distance", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 309-322, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "309-322", "proceedings_doi": "10.1007/978-3-319-16706-0_31", "journal": "Journal of Computational Biology", "journal_title": "A Fast and Exact Algorithm for the Exemplar Breakpoint Distance", "journal_authors": "Mingfu Shao, Bernard M.E. Moret", "journal_issue_pages": "23(5): 337-346", "journal_year": "2016", "journal_doi": "10.1089/cmb.2015.0193" }, { "author": "Maja Temerinac-Ott, Armaghan W. Naik, Robert F. Murphy", "title": "Deciding When to Stop: Efficient Experimentation to Learn to Predict Drug-Target Interactions", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 323-325, Springer, Cham.", "proceedings_volume": "9029", "proceedings_pages": "323-325", "proceedings_doi": "10.1007/978-3-319-16706-0_32", "preprint_id": "arXiv:1504.02406", "preprint_doi": "10.48550/arXiv.1504.02406", "journal": "BMC Bioinformatics", "journal_title": "Deciding when to stop: Efficient experimentation to learn to predict drug-target interactions", "journal_authors": "Maja Temerinac-Ott, Armaghan W. Naik, Robert F. Murphy", "journal_issue_pages": "16: 213", "journal_year": "2015", "journal_doi": "10.1186/s12859-015-0650-9" }, { "author": "Fabio Vandin, Benjamin J. Raphael, Eli Upfal", "title": "On the Sample Complexity of Cancer Pathways Identification", "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2015. 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