{
  "title": "20th Annual International Conference on Research in Computational Molecular Biology",
  "location": "Santa Monica, CA, United States",
  "dates": "April 17 - 21, 2016",
  "pc_chair": "Mona Singh",
  "organization_committee": "Eleazar Eskin (chair)",
  "keynotes": "Peter S. Kim, Rob Knight, Leonid Kruglyak, Phil Bradley, Teresa Przytycka, Karen Adelman",
  "website": "https://recomb.org/recomb2016/",
  "papers": [
    {
      "author": "Chandler Zuo, Kailei Chen, Sündüz Keleş",
      "title": "A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 19-36, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "19-36",
      "proceedings_doi": "10.1007/978-3-319-31957-5_2",
      "journal": "Journal of Computational Biology",
      "journal_title": "A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets",
      "journal_authors": "Chandler Zuo, Kailei Chen, Sündüz Keleş",
      "journal_issue_pages": "24(6): 472-485",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0138"
    },
    {
      "author": "Hao Wang, Joel McManus, Carl Kingsford",
      "title": "Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 37-52, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "37-52",
      "proceedings_doi": "10.1007/978-3-319-31957-5_3",
      "journal": "Journal of Computational Biology",
      "journal_title": "Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast",
      "journal_authors": "Hao Wang, Joel McManus, Carl Kingsford",
      "journal_issue_pages": "24(6): 486-500",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0147"
    },
    {
      "author": "Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan",
      "title": "Multitask Matrix Completion for Learning Protein Interactions Across Diseases",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 53-64, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "53-64",
      "proceedings_doi": "10.1007/978-3-319-31957-5_4",
      "journal": "Journal of Computational Biology",
      "journal_title": "Multitask Matrix Completion for Learning Protein Interactions Across Diseases",
      "journal_authors": "Meghana Kshirsagar, Keerthiram Murugesan, Jaime G. Carbonell, Judith Klein-Seetharaman",
      "journal_issue_pages": "24(6): 501-514",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0201"
    },
    {
      "author": "Simona Cristea, Jack Kuipers, Niko Beerenwinkel",
      "title": "pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 65-82, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "65-82",
      "proceedings_doi": "10.1007/978-3-319-31957-5_5",
      "journal": "Journal of Computational Biology",
      "journal_title": "pathTiMEx: joint inference of mutually exclusive cancer pathways and their progression dynamics",
      "journal_authors": "Simona Cristea, Jack Kuipers, Niko Beerenwinkel",
      "journal_issue_pages": "24(6): 603-615",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0171"
    },
    {
      "author": "Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, S. Cenk Sahinalp",
      "title": "Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 83-94, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "83-94",
      "proceedings_doi": "10.1007/978-3-319-31957-5_6",
      "journal": "Journal of Computational Biology",
      "journal_title": "Clonality Inference from Single Tumor Samples Using Low-Coverage Sequence Data",
      "journal_authors": "Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, S. Cenk Sahinalp",
      "journal_issue_pages": "24(6): 515-523",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0148"
    },
    {
      "author": "Nicolo Fusi and Jennifer Listgarten",
      "title": "Flexible Modelling of Genetic Effects on Function-Valued Traits",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 95-110, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "95-110",
      "proceedings_doi": "10.1007/978-3-319-31957-5_7",
      "journal": "Journal of Computational Biology",
      "journal_title": "Flexible Modeling of Genetic Effects on Function-Valued Traits",
      "journal_authors": "Nicolò Fusi, Jennifer Listgarten",
      "journal_issue_pages": "24(6): 524-535",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0174"
    },
    {
      "author": "Ahmed Sobih, Alexandru I. Tomescu, Veli Mäkinen",
      "title": "MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 111-121, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "111-121",
      "proceedings_doi": "10.1007/978-3-319-31957-5_8",
      "preprint_id": "bioRxiv 038208",
      "preprint_doi": "10.1101/038208"
    },
    {
      "author": "Mark A. Hallen, Jonathan D. Jou, Bruce R. Donald",
      "title": "LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 122-136, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "122-136",
      "proceedings_doi": "10.1007/978-3-319-31957-5_9",
      "journal": "Journal of Computational Biology",
      "journal_title": "LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-Rotamer-Like Efficiency",
      "journal_authors": "Mark A. Hallen, Jonathan D. Jou, Bruce R. Donald",
      "journal_issue_pages": "24(6): 536-546",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0136"
    },
    {
      "author": "David Pellow, Darya Filippova, Carl Kingsford",
      "title": "Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 137-151, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "137-151",
      "proceedings_doi": "10.1007/978-3-319-31957-5_10",
      "journal": "Journal of Computational Biology",
      "journal_title": "Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters",
      "journal_authors": "David Pellow, Darya Filippova, Carl Kingsford",
      "journal_issue_pages": "24(6): 547-557",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0155"
    },
    {
      "author": "Alexandru I. Tomescu and Paul Medvedev",
      "title": "Safe and Complete Contig Assembly Via Omnitigs",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 152-163, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "152-163",
      "proceedings_doi": "10.1007/978-3-319-31957-5_11",
      "preprint_id": "arXiv:1601.02932",
      "preprint_doi": "10.48550/arXiv.1601.02932",
      "journal": "Journal of Computational Biology",
      "journal_title": "Safe and complete contig assembly through omnitigs",
      "journal_authors": "Alexandru I. Tomescu, Paul Medvedev",
      "journal_issue_pages": "24(6): 590-602",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0141"
    },
    {
      "author": "Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky",
      "title": "Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 164-175, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "164-175",
      "proceedings_doi": "10.1007/978-3-319-31957-5_12",
      "preprint_id": "bioRxiv 036392",
      "preprint_doi": "10.1101/036392",
      "journal": "Journal of Computational Biology",
      "journal_title": "Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants",
      "journal_authors": "Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky",
      "journal_issue_pages": "24(6): 558-570",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0146"
    },
    {
      "author": "Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad",
      "title": "Structural Variation Detection with Read Pair Information-An Improved Null-Hypothesis Reduces Bias",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 176-188, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "176-188",
      "proceedings_doi": "10.1007/978-3-319-31957-5_13",
      "preprint_id": "bioRxiv 036707",
      "preprint_doi": "10.1101/036707",
      "journal": "Journal of Computational Biology",
      "journal_title": "Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias",
      "journal_authors": "Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad",
      "journal_issue_pages": "24(6): 581-589",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0124"
    },
    {
      "author": "Mingfu Shao and Bernard M.E. Moret",
      "title": "On Computing Breakpoint Distances for Genomes with Duplicate Genes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 189-203, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "189-203",
      "proceedings_doi": "10.1007/978-3-319-31957-5_14",
      "journal": "Journal of Computational Biology",
      "journal_title": "On Computing Breakpoint Distances for Genomes with Duplicate Genes",
      "journal_authors": "Mingfu Shao, Bernard M.E. Moret",
      "journal_issue_pages": "24(6): 571-580",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2016.0149"
    },
    {
      "author": "Luis Antonio B. Kowada, Daniel Doerr, Simone Dantas, Jens Stoye",
      "title": "New Genome Similarity Measures Based on Conserved Gene Adjacencies",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 204-224, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "204-224",
      "proceedings_doi": "10.1007/978-3-319-31957-5_15",
      "journal": "Journal of Computational Biology",
      "journal_title": "New Genome Similarity Measures Based on Conserved Gene Adjacencies",
      "journal_authors": "Daniel Doerr, Luis Antonio B. Kowada, Francisco Eloi Soares de Araujo, Shachi Deshpande, Simone Dantas, Bernard M. E. Moret, Jens Stoye",
      "journal_issue_pages": "24(6): 616-634",
      "journal_year": "2017",
      "journal_doi": "10.1089/cmb.2017.0065"
    },
    {
      "author": "Constantinos Tsirogiannis and Brody Sandel",
      "title": "Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 225-238, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "225-238",
      "proceedings_doi": "10.1007/978-3-319-31957-5_16"
    },
    {
      "author": "Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy Purvis, Li Qian, Alexander Hartemink, Jan F. Prins",
      "title": "SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 239-240, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "239-240",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "bioRxiv 047845",
      "preprint_doi": "10.1101/047845",
      "journal": "Genome Biology",
      "journal_title": "SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data",
      "journal_authors": "Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy Purvis, Li Qian, Alexander Hartemink, Jan F. Prins",
      "journal_issue_pages": "17(1): 106",
      "journal_year": "2016",
      "journal_doi": "10.1186/s13059-016-0975-3"
    },
    {
      "author": "Chenchen Zou, Yuping Zhang, Zhengqing Ouyang",
      "title": "Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 241-241, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "241-241",
      "proceedings_doi": "10.1007/978-3-319-31957-5"
    },
    {
      "author": "Yael Steuerman and Irit Gat-Viks",
      "title": "Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 242-243, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "242-243",
      "proceedings_doi": "10.1007/978-3-319-31957-5"
    },
    {
      "author": "Emre Sefer and Ziv-Bar Joseph",
      "title": "Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 244-245, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "244-245",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "journal": "Cell Systems",
      "journal_title": "Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments",
      "journal_authors": "Emre Sefer, Ziv Bar-Joseph",
      "journal_issue_pages": "3(1): 35-42",
      "journal_year": "2016",
      "journal_doi": "10.1016/j.cels.2016.06.007"
    },
    {
      "author": "Sean Simmons, Cenk Sahinalp, Bonnie Berger",
      "title": "Enabling Privacy Preserving GWAS in Heterogeneous Human Populations",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 246-247, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "246-247",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "arXiv:1604.04484",
      "preprint_doi": "10.48550/arXiv.1604.04484",
      "journal": "Cell Systems",
      "journal_title": "Enabling Privacy-Preserving GWASs in Heterogeneous Human Populations",
      "journal_authors": "Sean Simmons, Cenk Sahinalp, Bonnie Berger",
      "journal_issue_pages": "3(1):54-61",
      "journal_year": "2016",
      "journal_doi": "10.1016/j.cels.2016.04.013"
    },
    {
      "author": "Tommy Hansen and Fabio Vandin",
      "title": "Finding Mutated Subnetworks Associated with Survival in Cancer",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 250-250, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "250-250",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "arXiv:1604.02467",
      "preprint_doi": "10.48550/arXiv.1604.02467"
    },
    {
      "author": "Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael",
      "title": "Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 251-251, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "251-251",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "arXiv:1604.02605",
      "preprint_doi": "10.48550/arXiv.1604.02605",
      "journal": "Cell Systems",
      "journal_title": "Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures",
      "journal_authors": "Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael",
      "journal_issue_pages": "3(1):43-53",
      "journal_year": "2016",
      "journal_doi": "10.1016/j.cels.2016.07.004"
    },
    {
      "author": "Katharina Jahn, Jack Kuipers, Niko Beerenwinkel",
      "title": "Tree Inference for Single-Cell Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 252-252, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "252-252",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "bioRxiv 047795",
      "preprint_doi": "10.1101/047795",
      "journal": "Genome Biology",
      "journal_title": "Tree Inference for Single-Cell Data",
      "journal_authors": "Katharina Jahn, Jack Kuipers, Niko Beerenwinkel",
      "journal_issue_pages": "17(1): 86",
      "journal_year": "2016",
      "journal_doi": "10.1186/s13059-016-0936-x"
    },
    {
      "author": "Yuqing Yang, Ning Chen, Ting Chen",
      "title": "mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association Discovery",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 253-254, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "253-254",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "bioRxiv 042630",
      "preprint_doi": "10.1101/042630"
    },
    {
      "author": "Yunan Luo, Jianyang Zeng, Bonnie Berger, Jian Peng",
      "title": "Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 255-257, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "255-257",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "arXiv:1604.02699",
      "preprint_doi": "10.48550/arXiv.1604.02699",
      "journal": "Bioinformatics",
      "journal_title": "Metagenomic binning through low-density hashing",
      "journal_authors": "Yunan Luo, Yun William Yu, Jianyang Zeng, Bonnie Berger, Jian Peng",
      "journal_issue_pages": "35(2): 219-226",
      "journal_year": "2018",
      "journal_doi": "10.1093/bioinformatics/bty611"
    },
    {
      "author": "Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel Pevzner",
      "title": "metaSPAdes: A New Versatile de novo Metagenomics Assembler",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 258-258, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "258-258",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "arXiv:1604.03071",
      "preprint_doi": "10.48550/arXiv.1604.03071",
      "journal": "Genome Research",
      "journal_title": "metaSPAdes: a new versatile metagenomic assembler",
      "journal_authors": "Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Pavel A Pevzner",
      "journal_issue_pages": "27(5) 824-834",
      "journal_year": "2017",
      "journal_doi": "10.1101/gr.213959.116"
    },
    {
      "author": "Shashank Singh, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph",
      "title": "Distributed Gradient Descent in Bacterial Food Search",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 259-260, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "259-260",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "arXiv:1604.03052",
      "preprint_doi": "10.48550/arXiv.1604.03052"
    },
    {
      "author": "Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka",
      "title": "AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 261-262, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "261-262",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "bioRxiv 047357",
      "preprint_doi": "10.1101/047357"
    },
    {
      "author": "John Wiedenhoeft, Eric Brugel, Alexander Schliep",
      "title": "Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 263-263, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "263-263",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "bioRxiv 023705",
      "preprint_doi": "10.1101/023705",
      "journal": "PLoS Computational Biology",
      "journal_title": "Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression",
      "journal_authors": "John Wiedenhoeft, Eric Brugel, Alexander Schliep",
      "journal_issue_pages": "12(5): e1004871",
      "journal_year": "2016",
      "journal_doi": "10.1371/journal.pcbi.1004871"
    },
    {
      "author": "Yang Li, Shiguo Zhou, David C. Schwartz, Jian Ma",
      "title": "Allele-Specific Quantification of Structural Variations in Cancer Genomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 264-264, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "264-264",
      "proceedings_doi": "10.1007/978-3-319-31957-5",
      "preprint_id": "bioRxiv 048207",
      "preprint_doi": "10.1101/048207",
      "journal": "Cell Systems",
      "journal_title": "Allele-Specific Quantification of Structural Variations in Cancer Genomes",
      "journal_authors": "Yang Li, Shiguo Zhou, David C. Schwartz, Jian Ma",
      "journal_issue_pages": "3(1): 21-34",
      "journal_year": "2016",
      "journal_doi": "10.1016/j.cels.2016.05.007"
    },
    {
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    {
      "author": "Somaye Hashemifar, Qixing Huang, Jinbo Xu",
      "title": "Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 267-269, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "267-269",
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      "journal": "Journal of Computational Biology",
      "journal_title": "Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization",
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    {
      "author": "Xiuli Ma, Guangyu Zhou, Jingjing Wang, Jian Peng, Jiawei Han",
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      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2016. Lecture Notes in Computer Science, vol 9649, pp 270-272, Springer, Cham.",
      "proceedings_volume": "9649",
      "proceedings_pages": "270-272",
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      "preprint_id": "arXiv:1604.03244",
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      "journal": "Journal of Computational Biology",
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    }
  ]
}