{
  "title": "21st Annual International Conference on Research in Computational Molecular Biology",
  "location": "Hong Kong",
  "dates": "May 3 - 7, 2017",
  "pc_chair": "S. Cenk Sahinalp",
  "organization_committee": "Siu Ming Yiu (chair), Kevin Yip, Alexander Schoenhuth, Paul Medvedev",
  "keynotes": "Colin Collins, Joe Gray, Laxmi Parida, Ben Raphael, Michael Schnall-Levin, Jun Wang",
  "website": "https://recomb.org/recomb2017/",
  "papers": [
    {
      "author": "Dan DeBlasio and John Kececioglu",
      "title": "Boosting Alignment Accuracy by Adaptive Local Realignment",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 1-17, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "1-17",
      "proceedings_doi": "10.1007/978-3-319-56970-3_1",
      "preprint_id": "bioRxiv 063131",
      "preprint_doi": "10.1101/063131"
    },
    {
      "author": "Wontack Han, Mingjie Wang, Yuzhen Ye",
      "title": "A Concurrent Subtractive Assembly Approach for Identification of Disease Associated Sub-metagenomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 18-33, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "18-33",
      "proceedings_doi": "10.1007/978-3-319-56970-3_2"
    },
    {
      "author": "David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov",
      "title": "A Flow Procedure for the Linearization of Genome Sequence Graphs",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 34-49, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "34-49",
      "proceedings_doi": "10.1007/978-3-319-56970-3_3",
      "preprint_id": "bioRxiv 101501",
      "preprint_doi": "10.1101/101501",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Flow Procedure for Linearization of Genome Sequence Graphs",
      "journal_authors": "David Haussler, Maciej Smuga-Otto, Jordan M. Eizenga, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov",
      "journal_issue_pages": "25(7): 664-676",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0248"
    },
    {
      "author": "Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach",
      "title": "Dynamic Alignment-Free and Reference-Free Read Compression",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 50-65, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "50-65",
      "proceedings_doi": "10.1007/978-3-319-56970-3_4",
      "journal": "Journal of Computational Biology",
      "journal_title": "Dynamic Alignment-Free and Reference-Free Read Compression",
      "journal_authors": "Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach",
      "journal_issue_pages": "25(7): 825-836",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2018.0068"
    },
    {
      "author": "Chirag Jain, Alexander Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy",
      "title": "A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 66-81, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "66-81",
      "proceedings_doi": "10.1007/978-3-319-56970-3_5",
      "preprint_id": "bioRxiv 103812",
      "preprint_doi": "10.1101/103812",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases",
      "journal_authors": "Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy",
      "journal_issue_pages": "25(7): 766-779",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2018.0036"
    },
    {
      "author": "Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung",
      "title": "Determining the Consistency of Resolved Triplets and Fan Triplets",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 82-98, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "82-98",
      "proceedings_doi": "10.1007/978-3-319-56970-3_6",
      "journal": "Journal of Computational Biology",
      "journal_title": "Determining the Consistency of Resolved Triplets and Fan Triplets",
      "journal_authors": "Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung",
      "journal_issue_pages": "25(7): 740-754",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0256"
    },
    {
      "author": "Uri Keich and William Stafford Noble",
      "title": "Progressive Calibration and Averaging for Tandem Mass Spectrometry Statistical Confidence Estimation: Why Settle for a Single Decoy?",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 99-116, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "99-116",
      "proceedings_doi": "10.1007/978-3-319-56970-3_7"
    },
    {
      "author": "Mark J. Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler",
      "title": "Resolving Multicopy Duplications de novo Using Polyploid Phasing",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 117-133, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "117-133",
      "proceedings_doi": "10.1007/978-3-319-56970-3_8"
    },
    {
      "author": "Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek",
      "title": "A Bayesian Active Learning Experimental Design for Inferring Signaling Networks",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 134-156, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "134-156",
      "proceedings_doi": "10.1007/978-3-319-56970-3_9",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Bayesian Active Learning Experimental Design for Inferring Signaling Networks",
      "journal_authors": "Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek",
      "journal_issue_pages": "25(7): 709-725",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0247"
    },
    {
      "author": "Adegoke A. Ojewole, Jonathan D. Jou, Vance G. Fowler, Bruce R. Donald",
      "title": "BBK* (Branch and Bound over K*): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 157-172, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "157-172",
      "proceedings_doi": "10.1007/978-3-319-56970-3_10",
      "journal": "Journal of Computational Biology",
      "journal_title": "BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces",
      "journal_authors": "Adegoke A. Ojewole, Jonathan D. Jou, Vance G. Fowler, Bruce Randall Donald",
      "journal_issue_pages": "25(7): 726-739",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0267"
    },
    {
      "author": "Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey",
      "title": "Superbubbles, Ultrabubbles and Cacti",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 173-189, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "173-189",
      "proceedings_doi": "10.1007/978-3-319-56970-3_11",
      "preprint_id": "bioRxiv 101493",
      "preprint_doi": "10.1101/101493",
      "journal": "Journal of Computational Biology",
      "journal_title": "Superbubbles, Ultrabubbles, and Cacti",
      "journal_authors": "Benedict Paten, Jordan M. Eizenga, Yohei M. Rosen, Adam M. Novak, Erik Garrison, Glenn Hickey",
      "journal_issue_pages": "25(7): 649-663",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0251"
    },
    {
      "author": "Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert",
      "title": "EPR-Dictionaries: A Practical and Fast Data Structure for Constant Time Searches in Unidirectional and Bidirectional FM Indices",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 190-206, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "190-206",
      "proceedings_doi": "10.1007/978-3-319-56970-3_12",
      "preprint_id": "arXiv:1608.02413",
      "preprint_doi": "10.48550/arXiv.1608.02413"
    },
    {
      "author": "Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin",
      "title": "A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 207-223, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "207-223",
      "proceedings_doi": "10.1007/978-3-319-56970-3_13",
      "preprint_id": "bioRxiv 112417",
      "preprint_doi": "10.1101/112417",
      "journal": "Genome Biology",
      "journal_title": "BayesCCE: a Bayesian framework for estimating cell-type composition from DNA methylation without the need for methylation reference",
      "journal_authors": "Elior Rahmani, Regev Schweiger, Liat Shenhav, Theodora Wingert, Ira Hofer, Eilon Gabel, Eleazar Eskin, Eran Halperin",
      "journal_issue_pages": "19: 141",
      "journal_year": "2018",
      "journal_doi": "10.1186/s13059-018-1513-2"
    },
    {
      "author": "Ashok Rajaraman and Jian Ma",
      "title": "Towards Recovering Allele-Specific Cancer Genome Graphs",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 224-240, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "224-240",
      "proceedings_doi": "10.1007/978-3-319-56970-3_14",
      "journal": "Journal of Computational Biology",
      "journal_title": "Toward Recovering Allele-specific Cancer Genome Graphs",
      "journal_authors": "Ashok Rajaraman, Jian Ma",
      "journal_issue_pages": "25(7): 624-636",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2018.0022"
    },
    {
      "author": "Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin",
      "title": "Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 241-256, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "241-256",
      "proceedings_doi": "10.1007/978-3-319-56970-3_15",
      "journal": "Journal of Computational Biology",
      "journal_title": "Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability",
      "journal_authors": "Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin",
      "journal_issue_pages": "25(7): 794-808",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2018.0047"
    },
    {
      "author": "Brad Solomon and Carl Kingsford",
      "title": "Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 257-271, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "257-271",
      "proceedings_doi": "10.1007/978-3-319-56970-3_16",
      "preprint_id": "bioRxiv 086561",
      "preprint_doi": "10.1101/086561",
      "journal": "Journal of Computational Biology",
      "journal_title": "Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees",
      "journal_authors": "Brad Solomon and Carl Kingsford",
      "journal_issue_pages": "25(7): 755-765",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0265"
    },
    {
      "author": "Chen Sun, Robert S. Harris, Rayan Chikhi, Paul Medvedev",
      "title": "AllSome Sequence Bloom Trees",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 272-286, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "272-286",
      "proceedings_doi": "10.1007/978-3-319-56970-3_17",
      "preprint_id": "bioRxiv 090464",
      "preprint_doi": "10.1101/090464",
      "journal": "Journal of Computational Biology",
      "journal_title": "AllSome Sequence Bloom Trees",
      "journal_authors": "Chen Sun, Robert S. Harris, Rayan Chikhi, Paul Medvedev",
      "journal_issue_pages": "25(5): 467-479",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0258"
    },
    {
      "author": "Xiaoqian Wang, Jingwen Yan, Xiaohui Yao, Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Andrew J. Saykin, Li Shen, Heng Huang",
      "title": "Longitudinal Genotype-Phenotype Association Study via Temporal Structure Auto-learning Predictive Model",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 287-302, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "287-302",
      "proceedings_doi": "10.1007/978-3-319-56970-3_18",
      "journal": "Journal of Computational Biology",
      "journal_title": "Longitudinal Genotype-Phenotype Association Study through Temporal Structure Auto-Learning Predictive Model",
      "journal_authors": "Xiaoqian Wang, Jingwen Yan, Xiaohui Yao, Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Andrew J. Saykin, Li Shen, Heng Huang",
      "journal_issue_pages": "25(7): 809-824",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2018.0008"
    },
    {
      "author": "Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin",
      "title": "Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 303-317, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "303-317",
      "proceedings_doi": "10.1007/978-3-319-56970-3_19",
      "journal": "Journal of Computational Biology",
      "journal_title": "Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies",
      "journal_authors": "Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin",
      "journal_issue_pages": "26(11): 1203-1213",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2018.0139"
    },
    {
      "author": "Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael",
      "title": "The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 318-335, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "318-335",
      "proceedings_doi": "10.1007/978-3-319-56970-3_20"
    },
    {
      "author": "Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân",
      "title": "Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 336-352, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "336-352",
      "proceedings_doi": "10.1007/978-3-319-56970-3_21"
    },
    {
      "author": "Soyeon Ahn and Haris Vikalo",
      "title": "aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 353-369, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "353-369",
      "proceedings_doi": "10.1007/978-3-319-56970-3_22",
      "preprint_id": "bioRxiv 103630",
      "preprint_doi": "10.1101/103630",
      "journal": "Journal of Computational Biology",
      "journal_title": "aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity",
      "journal_authors": "Soyeon Ahn, Haris Vikalo",
      "journal_issue_pages": "25(7): 637-648",
      "journal_year": "2018",
      "journal_doi": "10.1089/cmb.2017.0249"
    },
    {
      "author": "Phuong Dao, Yoo-Ah Kim, Sanna Madan, Roded Sharan, Teresa M. Przytycka",
      "title": "BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 370-371, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "370-371",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "arXiv:1704.08889",
      "preprint_doi": "10.48550/arXiv.1704.08889",
      "journal": "PLoS Computational Biology",
      "journal_title": "BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions",
      "journal_authors": "Phuong Dao , Yoo-Ah Kim , Damian Wojtowicz, Sanna Madan, Roded Sharan , Teresa M. Przytycka",
      "journal_issue_pages": "13(10): e1005695",
      "journal_year": "2017",
      "journal_doi": "10.1371/journal.pcbi.1005695"
    },
    {
      "author": "Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford",
      "title": "K-mer Set Memory (KSM) Motif Representation Enables Accurate Prediction of the Impact of Regulatory Variants",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 372-374, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "372-374",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "bioRxiv 130815",
      "preprint_doi": "10.1101/130815",
      "journal": "Genome Research",
      "journal_title": "A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction",
      "journal_authors": "Yuchun Guo, Kevin Tian, Haoyang Zeng, Xiaoyun Guo, David Kenneth Gifford",
      "journal_issue_pages": "28(6):891-900",
      "journal_year": "2018",
      "journal_doi": "10.1101/gr.226852.117"
    },
    {
      "author": "Borislav H. Hristov and Mona Singh",
      "title": "Network-Based Coverage of Mutational Profiles Reveals Cancer Genes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 375-376, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "375-376",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "arXiv:1704.08544",
      "preprint_doi": "10.48550/arXiv.1704.08544",
      "journal": "Cell systems",
      "journal_title": "Network-Based Coverage of Mutational Profiles Reveals Cancer Genes",
      "journal_authors": "Borislav H. Hristov and Mona Singh",
      "journal_issue_pages": "5(3): 221-229.e4",
      "journal_year": "2017",
      "journal_doi": "10.1016/j.cels.2017.09.003"
    },
    {
      "author": "Linh Huynh and Fereydoun Hormozdiari",
      "title": "Ultra-Accurate Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 377-378, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "377-378",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "bioRxiv 129775",
      "preprint_doi": "10.1101/129775",
      "journal": "Genetics",
      "journal_title": "Combinatorial Approach for Complex Disorder Prediction: Case Study of Neurodevelopmental Disorder",
      "journal_authors": "Linh Huynh and Fereydoun Hormozdiari",
      "journal_issue_pages": "210(4): 1483-1495",
      "journal_year": "2018",
      "journal_doi": "10.1534/genetics.118.301280"
    },
    {
      "author": "Michael K.K. Leung, Andrew Delong, Brendan J. Frey",
      "title": "Inference of the Human Polyadenylation Code",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 379-379, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "379-379",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "bioRxiv 130591",
      "preprint_doi": "10.1101/130591",
      "journal": "Bioinformatics",
      "journal_title": "Inference of the human polyadenylation code",
      "journal_authors": "Michael K.K. Leung, Andrew Delong, Brendan J. Frey",
      "journal_issue_pages": "34(17): 2889-2898",
      "journal_year": "2018",
      "journal_doi": "10.1093/BIOINFORMATICS/BTY211"
    },
    {
      "author": "Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu",
      "title": "Folding Membrane Proteins by Deep Transfer learning",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 380-382, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "380-382",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "bioRxiv 181628",
      "preprint_doi": "10.1101/181628",
      "journal": "Cell systems",
      "journal_title": "Folding Membrane Proteins by Deep Transfer Learning"
    },
    {
      "author": "Yunan Luo, Xinbin Zhao, Jingtian Zhou, Jinling Yang, Yanging Zhang, Wenhua Kuang, Jian Peng, Ligong Chen, Jianyang Zeng",
      "title": "A Network Integration Approach for Drug-Target Interaction Prediction and Computational Drug Repositioning from Heterogeneous Information",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2017. Lecture Notes in Computer Science, vol 10229, pp 383-384, Springer, Cham.",
      "proceedings_volume": "10229",
      "proceedings_pages": "383-384",
      "proceedings_doi": "10.1007/978-3-319-56970-3",
      "preprint_id": "bioRxiv 100305",
      "preprint_doi": "10.1101/100305",
      "journal": "Nature Communications",
      "journal_title": "A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information",
      "journal_authors": "Yunan Luo, Xinbin Zhao, Jingtian Zhou, Jinglin Yang, Yanqing Zhang, Wenhua Kuang, Jian Peng, Ligong Chen,Jianyang Zeng",
      "journal_issue_pages": "8: 573",
      "journal_year": "2017",
      "journal_doi": "10.1038/s41467-017-00680-8"
    },
    {
      "author": "Dariusz Matlak and Ewa Szczurek",
      "title": "Epistasis in Genomic and Survival Data of Cancer Patients",
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