{
  "title": "22nd Annual International Conference on Research in Computational Molecular Biology",
  "location": "Paris, France",
  "dates": "April 21 - 24, 2018",
  "pc_chair": "Benjamin J. Raphael",
  "organization_committee": "Yann Ponty (co-chair), Mireille Regnier (co-chair), Alessandra Carbone, Celine Scornavacca, Eric Tannier, Hélène Touzet, Stéphane Vialette",
  "keynotes": "Peter Campbell, Ron Shamir, Sarah Teichmann, Nevan Krogan, Francois Spitz, Tandy Warnow",
  "website": "https://recomb.org/recomb2018/",
  "papers": [
    {
      "author": "Anton Bankevich and Pavel Pevzner",
      "title": "Long Reads Enable Accurate Estimates of Complexity of Metagenomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 1-20, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "1-20",
      "proceedings_doi": "10.1007/978-3-319-89929-9_1",
      "journal": "Cell Systems",
      "journal_title": "Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity",
      "journal_authors": "Anton Bankevich and Pavel Pevzner",
      "journal_issue_pages": "7(2):192–200.e3",
      "journal_year": "2018",
      "journal_doi": "10.1016/j.cels.2018.06.009"
    },
    {
      "author": "Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz",
      "title": "Chromatyping: Reconstructing Nucleosome Profiles from NOME Sequencing Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 21-36, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "21-36",
      "proceedings_doi": "10.1007/978-3-319-89929-9_2",
      "journal": "Journal of Computational Biology",
      "journal_title": "Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data",
      "journal_authors": "Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz",
      "journal_issue_pages": "27(3):330-341",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0457"
    },
    {
      "author": "Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, S. Cenk Sahinalp, Hamidreza Chitsaz",
      "title": "GTED: Graph Traversal Edit Distance",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 37-53, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "37-53",
      "proceedings_doi": "10.1007/978-3-319-89929-9_3",
      "journal": "Journal of Computational Biology",
      "journal_title": "Graph Traversal Edit Distance and Extensions",
      "journal_authors": "Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, S. Cenk Sahinalp, and Hamidreza Chitsaz",
      "journal_issue_pages": "27(3):317-329",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0511"
    },
    {
      "author": "Cyril Galitzine, Pierre M. Jean Beltran, Ileana M. Cristea, Olga Vitek",
      "title": "Statistical Inference of Peroxisome Dynamics",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 54-74, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "54-74",
      "proceedings_doi": "10.1007/978-3-319-89929-9_4"
    },
    {
      "author": "Franziska Görtler, Stefan Solbrig, Tilo Wettig, Peter J. Oefner, Rainer Spang, Michael Altenbuchinger",
      "title": "Loss-Function Learning for Digital Tissue Deconvolution",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 75-89, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "75-89",
      "proceedings_doi": "10.1007/978-3-319-89929-9_5",
      "preprint_id": "arXiv:1801.08447",
      "preprint_doi": "10.48550/arXiv.1801.08447",
      "journal": "Journal of Computational Biology",
      "journal_title": "Loss-Function Learning for Digital Tissue Deconvolution",
      "journal_authors": "Franziska Görtler, Marian Schön, Jakob Simeth, Stefan Solbrig, Tilo Wettig, Peter J. Oefner, Rainer Spang, and Michael Altenbuchinger",
      "journal_issue_pages": "27(3):342-355",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0462"
    },
    {
      "author": "Tyler A. Joseph and Itsik Pe'er",
      "title": "Inference of Population Structure from Ancient DNA",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 90-104, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "90-104",
      "proceedings_doi": "10.1007/978-3-319-89929-9_6",
      "preprint_id": "bioRxiv 261131",
      "preprint_doi": "10.1101/261131"
    },
    {
      "author": "Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru Tomescu, Veli Mäkinen",
      "title": "Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-linear Chaining Extended",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 105-121, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "105-121",
      "proceedings_doi": "10.1007/978-3-319-89929-9_7",
      "preprint_id": "arXiv:1705.08754",
      "preprint_doi": "10.48550/arXiv.1705.08754"
    },
    {
      "author": "Gary Larson, Jeffrey L. Thorne, Scott Schmidler",
      "title": "Modeling Dependence in Evolutionary Inference for Proteins",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 122-137, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "122-137",
      "proceedings_doi": "10.1007/978-3-319-89929-9_8",
      "journal": "Journal of Computational Biology",
      "journal_title": "Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models",
      "journal_authors": "Gary Larson, Jeffrey L. Thorne, and Scott Schmidler",
      "journal_issue_pages": "27(3):361-375",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0500"
    },
    {
      "author": "Sujun Li, Alex DeCourcy, Haixu Tang",
      "title": "Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 138-153, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "138-153",
      "proceedings_doi": "10.1007/978-3-319-89929-9_9"
    },
    {
      "author": "Yaron Orenstein",
      "title": "Reverse de Bruijn: Utilizing Reverse Peptide Synthesis to Cover All Amino Acid k-mers",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 154-166, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "154-166",
      "proceedings_doi": "10.1007/978-3-319-89929-9_10",
      "journal": "Journal of Computational Biology",
      "journal_title": "Reverse de Bruijn: Utilizing Reverse Peptide Synthesis to Cover All Amino Acid k-mers",
      "journal_authors": "Yaron Orenstein",
      "journal_issue_pages": "27(3):376-385",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0448"
    },
    {
      "author": "Sebastien Roch and Kun-Chieh Wang",
      "title": "Circular Networks from Distorted Metrics",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 167-176, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "167-176",
      "proceedings_doi": "10.1007/978-3-319-89929-9_11",
      "preprint_id": "arXiv:1707.05722",
      "preprint_doi": "10.48550/arXiv.1707.05722"
    },
    {
      "author": "Antoine Soulé, Jean-Marc Steyaert, Jérôme Waldispühl",
      "title": "A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces Cerevisae",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 177-193, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "177-193",
      "proceedings_doi": "10.1007/978-3-319-89929-9_12",
      "preprint_id": "bioRxiv 293555",
      "preprint_doi": "10.1101/293555",
      "journal": "Journal of Computational Biology",
      "journal_title": "A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces cerevisiae",
      "journal_authors": "Antoine Soulé, Jean-Marc Steyaert, Jérôme Waldispühl",
      "journal_issue_pages": "27(3):390-402",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0401"
    },
    {
      "author": "Yuriy Sverchkov, Yi-Hsuan Ho, Audrey Gasch, Mark Craven",
      "title": "Context-Specific Nested Effects Models",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 194-210, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "194-210",
      "proceedings_doi": "10.1007/978-3-319-89929-9_13",
      "journal": "Journal of Computational Biology",
      "journal_title": "Context-Specific Nested Effects Models",
      "journal_authors": "Yuriy Sverchkov, Yi-Hsuan Ho, Audrey P. Gasch, Mark Craven",
      "journal_issue_pages": "27(3):403-417",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0459"
    },
    {
      "author": "Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru",
      "title": "Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 211-224, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "211-224",
      "proceedings_doi": "10.1007/978-3-319-89929-9_14"
    },
    {
      "author": "Zhemin Zhou, Nina Luhmann, Nabil-Fareed Alikhan, Christopher Quince, Mark Achtman",
      "title": "Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 225-242, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "225-242",
      "proceedings_doi": "10.1007/978-3-319-89929-9_15",
      "preprint_id": "bioRxiv 215707",
      "preprint_doi": "10.1101/215707"
    },
    {
      "author": "Mehrdad Bakhtiari, Sharona Shleizer-Burko, Melissa Gymrek, Vikas Bansal, Vineet Bafna",
      "title": "Targeted Genotyping of Variable Number Tandem Repeats with AdVNTR",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 243-244, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "243-244",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 221754",
      "preprint_doi": "10.1101/221754",
      "journal": "Genome Research",
      "journal_title": "Targeted genotyping of variable number tandem repeats with adVNTR",
      "journal_authors": "Mehrdad Bakhtiari, Sharona Shleizer-Burko, Melissa Gymrek, Vikas Bansal and Vineet Bafna",
      "journal_issue_pages": "28:1709-1719",
      "journal_year": "2018",
      "journal_doi": "10.1101/gr.235119.118"
    },
    {
      "author": "Tristan Bepler, Andrew Morin, Alex J. Noble, Julia Brasch, Lawrence Shapiro, Bonnie Berger",
      "title": "Positive-Unlabeled Convolutional Neural Networks for Particle Picking in Cryo-electron Micrographs",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 245-247, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "245-247",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "arXiv:1803.08207",
      "preprint_doi": "10.48550/arXiv.1803.08207",
      "journal": "Nature Methods",
      "journal_title": "Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs",
      "journal_authors": "Tristan Bepler, Andrew Morin, Micah Rapp, Julia Brasch, Lawrence Shapiro, Alex J. Noble, Bonnie Berger",
      "journal_issue_pages": "16:1153–1160",
      "journal_year": "2018",
      "journal_doi": "10.1038/s41592-019-0575-8"
    },
    {
      "author": "Édouard Bonnet, Paweł Rzążewski, Florian Sikora",
      "title": "Designing RNA Secondary Structures Is Hard",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 248-250, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "248-250",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "arXiv:1710.11513",
      "preprint_doi": "10.48550/arXiv.1710.11513",
      "journal": "Journal of Computational Biology",
      "journal_title": "Designing RNA Secondary Structures Is Hard",
      "journal_authors": "Édouard Bonnet, Paweł Rzążewski, Florian Sikora",
      "journal_issue_pages": "27(3):302-316",
      "journal_year": "2020",
      "journal_doi": "10.1089/cmb.2019.0420"
    },
    {
      "author": "Hyunghoon Cho, Bonnie Berger, Jian Peng",
      "title": "Generalizable Visualization of Mega-Scale Single-Cell Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 251-253, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "251-253",
      "proceedings_doi": "10.1007/978-3-319-89929-9"
    },
    {
      "author": "Ghislain Durif, Laurent Modolo, Jeff E Mold, Sophie Lambert-Lacroix, Franck Picard",
      "title": "Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 254-255, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "254-255",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 211938",
      "preprint_doi": "10.1101/211938",
      "journal": "Bioinformatics",
      "journal_title": "Probabilistic count matrix factorization for single cell expression data analysis",
      "journal_authors": "Ghislain Durif, Laurent Modolo, Jeff E Mold, Sophie Lambert-Lacroix, Franck Picard",
      "journal_issue_pages": "35(20):4011-4019",
      "journal_year": "2019",
      "journal_doi": "10.1093/bioinformatics/btz177"
    },
    {
      "author": "Stefan Hammer, Yann Ponty, Wei Wang, Sebastian Will",
      "title": "Fixed-Parameter Tractable Sampling for RNA Design with Multiple Target Structures",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 256-258, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "256-258",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "arXiv:1804.00841",
      "preprint_doi": "10.48550/arXiv.1804.00841",
      "journal": "BMC Bioinformatics",
      "journal_title": "Fixed-parameter tractable sampling for RNA design with multiple target structures",
      "journal_authors": "Stefan Hammer, Wei Wang, Sebastian Will and Yann Ponty",
      "journal_issue_pages": "20(1):209",
      "journal_year": "2019",
      "journal_doi": "10.1186/s12859-019-2784-7"
    },
    {
      "author": "Linh Huynh and Fereydoun Hormozdiari",
      "title": "Contribution of Structural Variation to Genome Structure: TAD Fusion Discovery and Ranking",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 259-260, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "259-260",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 279356",
      "preprint_doi": "10.1101/279356",
      "journal": "Genome Biology",
      "journal_title": "TAD fusion score: discovery and ranking the contribution of deletions to genome structure",
      "journal_authors": "Linh Huynh and Fereydoun Hormozdiari",
      "journal_issue_pages": "20(1):60",
      "journal_year": "2019",
      "journal_doi": "10.1186/s13059-019-1666-7"
    },
    {
      "author": "Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel Pevzner",
      "title": "Assembly of Long Error-Prone Reads Using Repeat Graphs",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 261-262, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "261-262",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 247148",
      "preprint_doi": "10.1101/247148",
      "journal": "Nature Biotechnology",
      "journal_title": "Assembly of long, error-prone reads using repeat graphs",
      "journal_authors": "Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin and Pavel A. Pevzner",
      "journal_issue_pages": "37(5):540–546",
      "journal_year": "2019",
      "journal_doi": "10.1038/s41587-019-0072-8"
    },
    {
      "author": "Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin Hescott, Mark D.M. Leiserson",
      "title": "A Multi-species Functional Embedding Integrating Sequence and Network Structure",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 263-265, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "263-265",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 229211",
      "preprint_doi": "10.1101/229211",
      "journal": "Nucleic Acids Research",
      "journal_title": "Functional protein representations from biological networks enable diverse cross-species inference",
      "journal_authors": "Jason Fan , Anthony Cannistra , Inbar Fried , Tim Lim , Thomas Schaffner , Mark Crovella , Benjamin Hescott , Mark D M Leiserson",
      "journal_issue_pages": "47(9):e51",
      "journal_year": "2019",
      "journal_doi": "10.1093/nar/gkz132"
    },
    {
      "author": "Yunan Luo, Jianzhu Ma, Yang Liu, Qing Ye, Trey Ideker, Jian Peng",
      "title": "Deciphering Signaling Specificity with Deep Neural Networks",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 266-268, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "266-268",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 288647",
      "preprint_doi": "10.1101/288647"
    },
    {
      "author": "Salem Malikic, Katharina Jahn, Jack Kuipers, S. Cenk Sahinalp, Niko Beerenwinkel",
      "title": "Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 269-270, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "269-270",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 234914",
      "preprint_doi": "10.1101/234914",
      "journal": "Nature Communications",
      "journal_title": "Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data",
      "journal_authors": "Salem Malikic, Katharina Jahn, Jack Kuipers, S. Cenk Sahinalp & Niko Beerenwinkel",
      "journal_issue_pages": "10(1):2750",
      "journal_year": "2019",
      "journal_doi": "10.1038/s41467-019-10737-5"
    },
    {
      "author": "Prashant Pandey, Fatemeh Almodaresi, Michael A. Bender, Michael Ferdman, Rob Johnson, Rob Patro",
      "title": "Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 271-273, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "271-273",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 217372",
      "preprint_doi": "10.1101/217372",
      "journal": "Cell Systems",
      "journal_title": "Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index",
      "journal_authors": "Prashant Pandey, Fatemeh Almodaresi, Michael A Bender, Michael Ferdman, Rob Johnson, Rob Patro",
      "journal_issue_pages": "7(2):201-207",
      "journal_year": "2018",
      "journal_doi": "10.1016/j.cels.2018.05.021"
    },
    {
      "author": "Elior Rahmani, Regev Schweiger, Saharon Rosset, Sriram Sankararaman, Eran Halperin",
      "title": "Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic Studies",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 274-275, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "274-275",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "preprint_id": "bioRxiv 437368",
      "preprint_doi": "10.1101/437368",
      "journal": "Nature Communications",
      "journal_title": "Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology",
      "journal_authors": "Elior Rahmani, Regev Schweiger, Brooke Rhead, Lindsey A. Criswell, Lisa F. Barcellos, Eleazar Eskin, Saharon Rosset, Sriram Sankararaman & Eran Halperin",
      "journal_issue_pages": "10(1):3417",
      "journal_year": "2019",
      "journal_doi": "10.1038/s41467-019-11052-9"
    },
    {
      "author": "Shahab Sarmashghi, Kristine Bohmann, M. Thomas P. Gilbert, Vineet Bafna, Siavash Mirarab",
      "title": "Assembly-Free and Alignment-Free Sample Identification Using Genome Skims",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 276-277, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "276-277",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "journal": "Genome Biology",
      "journal_title": "Skmer: assembly-free and alignment-free sample identification using genome skims",
      "journal_authors": "Shahab Sarmashghi, Kristine Bohmann, M. Thomas P. Gilbert, Vineet Bafna, Siavash Mirarab",
      "journal_issue_pages": "20(1):34",
      "journal_year": "2019",
      "journal_doi": "10.1186/s13059-019-1632-4"
    },
    {
      "author": "Rebecca Sarto Basso, Dorit S. Hochbaum, Fabio Vandin",
      "title": "Efficient Algorithms to Discover Alterations with Complementary Functional Association in Cancer",
      "proceedings_name": "Research in Computational Molecular Biology. RECOMB 2018. Lecture Notes in Computer Science, vol 10812, pp 278-279, Springer, Cham.",
      "proceedings_volume": "10812",
      "proceedings_pages": "278-279",
      "proceedings_doi": "10.1007/978-3-319-89929-9",
      "journal": "PLOS Computational Biology",
      "journal_title": "Efficient algorithms to discover alterations with complementary functional association in cancer",
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    {
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}