RECOMB 2015 Proceedings

Warsaw, Poland, April 12 - 15, 2015

PC Chair: Teresa M. Przytycka
Organization Committee: Jerzy Tiuryn (co-chair), Bartek Wilczyński (co-chair), Paweł Bednarz, Agata Charzyńska, Norbert Dojer, Anna Gambin, Paweł Górecki, Ilona Grabowicz, Julia Herman-Iżycka, Aleksander Jankowski, Agnieszka Mykowiecka, Ewa Szczurek, Irina Tuszyńska, Damian Wójtowicz, Rafał Zaborowski
Keynote Speakers: Madan Babu, Bonnie Berger, M. Magda Konarska, Michael Levitt, Bas van Steensel, Wacław Szybalski
Website: https://recomb.org/recomb2015/
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List of Publications

• Efficient Alignment Free Sequence Comparison with Bounded Mismatches. Srinivas Aluru, Alberto Apostolico, Sharma V. Thankachan.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 1-12, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_1
  • Journal: A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem. Sharma V. Thankachan, Alberto Apostolico, Srinivas Aluru. Journal of Computational Biology, 23(6): 472-482, 2016.
    • DOI: 10.1089/cmb.2015.0235
• DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes. Naama Amir, Dan Cohen, Haim J. Wolfson.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 13-15, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_2
  • Journal: DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes. Naama Amir, Dan Cohen, Haim J. Wolfson. Bioinformatics, 31(17): 2801-2807, 2015.
    • DOI: 10.1093/bioinformatics/btv270
• CRISPR Detection from Short Reads Using Partial Overlap Graphs. Ilan Ben-Bassat and Benny Chor.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 16-27, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_3
  • Journal: CRISPR Detection From Short Reads Using Partial Overlap Graphs. Ilan Ben-Bassat, Benny Chor. Journal of Computational Biology, 23(6): 461-471, 2016.
    • DOI: 10.1089/cmb.2015.0226
• HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data. Emily Berger, Deniz Yorukoglu, Bonnie Berger.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 28-29, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_4
  • Journal: Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets. Emily R. Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist, Alex K. Shalek, Manolis Kellis, Ibrahim Numanagić, Bonnie Berger. Nature Communications, 11: 4662, 2020.
    • DOI: 10.1038/s41467-020-18320-z
• Read Clouds Uncover Variation in Complex Regions of the Human Genome. Alex Bishara, Yuling Liu, Dorna Kashef-Haghighi, Ziming Weng, Daniel E. Newburger, Robert West, Arend Sidow, Serafim Batzoglou.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 30-31, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_5
  • Journal: Read clouds uncover variation in complex regions of the human genome. Alex Bishara, Yuling Liu, Ziming Weng, Dorna Kashef-Haghighi, Daniel E. Newburger, Robert West, Arend Sidow, Serafim Batzoglou. Genome Research, 25(10): 1570-1580, 2015.
    • DOI: 10.1101/gr.191189.115
• Learning Microbial Interaction Networks from Metagenomic Count Data. Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 32-43, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_6
  • Preprint: arXiv:1412.0207
  • Journal: Learning Microbial Interaction Networks from Metagenomic Count Data. Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic. Journal of Computational Biology, 23(6): 526-535, 2016.
    • DOI: 10.1089/cmb.2016.0061
• Immunoglobulin Classification Using the Colored Antibody Graph. Stefano R. Bonissone and Pavel A. Pevzner.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 44-59, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_7
  • Journal: Immunoglobulin Classification Using the Colored Antibody Graph. Stefano R. Bonissone, Pavel A. Pevzner. Journal of Computational Biology, 23(6): 483-494, 2016.
    • DOI: 10.1089/cmb.2016.0010
• CIDANE: Comprehensive Isoform Discovery and Abundance Estimation. Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 60-61, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_8
  • Journal: CIDANE: comprehensive isoform discovery and abundance estimation. Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau. Genome Biology, 17: 16, 2016.
    • DOI: 10.1186/s13059-015-0865-0
• Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks. Hyunghoon Cho, Bonnie Berger, Jian Peng.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 62-64, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_9
  • Preprint: arXiv:1504.02719
  • Journal: Compact Integration of Multi-Network Topology for Functional Analysis of Genes. Hyunghoon Cho, Bonnie Berger, Jian Peng. Cell Systems, 3(6): 540-548, 2016.
    • DOI: 10.1016/j.cels.2016.10.017
• Fragmentation Trees Reloaded. Kai Dührkop and Sebastian Böcker.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 65-79, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_10
  • Preprint: arXiv:1412.1929
  • Journal: Fragmentation trees reloaded. Kai Dührkop, Sebastian Böcker. Journal of Cheminformatics, 8: 5, 2016.
    • DOI: 10.1186/s13321-016-0116-8
• KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids. Rasmus Fonseca, Henry van den Bedem, Julie Bernauer.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 80-95, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_11
  • Journal: Probing RNA Native Conformational Ensembles with Structural Constraints. Rasmus Fonseca, Henry van den Bedem, Julie Bernauer. Journal of Computational Biology, 23(5): 362-371, 2016.
    • DOI: 10.1089/cmb.2015.0201
• Locating a Tree in a Phylogenetic Network in Quadratic Time. Philippe Gambette, Andreas D.M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 96-107, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_12
  • Preprint: arXiv:1502.03379
• Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data. Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 108-121, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_13
  • Journal: Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data. Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng. Journal of Computational Biology, 23(5): 300-310, 2016.
    • DOI: 10.1089/cmb.2015.0184
• COMETS (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence. Mark A. Hallen and Bruce R. Donald.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 122-135, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_14
  • Journal: COMETS (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence. Mark A. Hallen, Bruce R. Donald. Journal of Computational Biology, 23(5): 311-321, 2016.
    • DOI: 10.1089/cmb.2015.0188
• Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure. Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nick Furlotte, Brian Parks, Aldons J. Lusis, Eleazar Eskin.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 136-153, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_15
  • Journal: Efficient and Accurate Multiple-Phenotype Regression Method for High Dimensional Data Considering Population Structure. Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nick Furlotte, Brian Parks, Farhad Hormozdiari, Aldons J. Lusis, Eleazar Eskin. Genetics, 204(4):1379-1390, 2016.
    • DOI: 10.1534/genetics.116.189712
• BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design. Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce R. Donald.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 154-166, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_16
  • Journal: *BWM: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design*. Jonathan D. Jou, Swati Jain, Ivelin S. Georgiev, Bruce R. Donald. *Journal of Computational Biology, 23(6): 413-424, 2016.
    • DOI: 10.1089/cmb.2015.0194
• An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations. Seunghak Lee, Aurélie Lozano, Prabhanjan Kambadur, Eric P. Xing.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 167-187, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_17
  • Journal: An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations. Seunghak Lee, Aurélie C. Lozano, Prabhanjan Kambadur, Eric P. Xing. Journal of Computational Biology, 23(5): 372-389, 2016.
    • DOI: 10.1089/cmb.2015.0202
• Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models. Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 188-201, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_18
  • Journal: Predicting Designability of Small Proteins from Graph Features of Contact Maps. Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski. Journal of Computational Biology, 23(5): 400-411, 2016.
    • DOI: 10.1089/cmb.2015.0209
• CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer. Mark D.M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 202-204, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_19
  • Journal: CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer. Mark D.M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael. Genome Biology, 16: 160, 2015.
    • DOI: 10.1186/s13059-015-0700-7
• Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters. Yifeng Li, Chih-Yu Chen, Wyeth W. Wasserman.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 205-217, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_20
  • Journal: Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters. Yifeng Li, Chih-Yu Chen, Wyeth W. Wasserman. Journal of Computational Biology, 23(5): 322-336, 2016.
    • DOI: 10.1089/cmb.2015.0189
• Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning. Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 218-221, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_21
  • Preprint: arXiv:1312.2988
  • Journal: Protein contact prediction by integrating joint evolutionary coupling analysis and supervised learning. Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu. Bioinformatics, 31(21): 3506-3513, 2015.
    • DOI: 10.1093/bioinformatics/btv472
• ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching. Igor Mandric and Alex Zelikovsky.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 222-223, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_22
  • Journal: ScaffMatch: scaffolding algorithm based on maximum weight matching. Igor Mandric, Alex Zelikovsky. Bioinformatics, 31(16): 2632-2638, 2015.
    • DOI: 10.1093/bioinformatics/btv211
• A Symmetric Length-Aware Enrichment Test. David Manescu and Uri Keich.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 224-242, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_23
  • Journal: A Symmetric Length-Aware Enrichment Test. David Manescu, Uri Keich. Journal of Computational Biology, 23(6): 508-525, 2016.
    • DOI: 10.1089/cmb.2016.0038
• Functional Alignment of Metabolic Networks. Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 243-255, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_24
  • Journal: Functional Alignment of Metabolic Networks. Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan. Journal of Computational Biology, 23(5): 390-399, 2016.
    • DOI: 10.1089/cmb.2015.0203
• Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. Andrew McPherson, Andrew Roth, Cedric Chauve, S. Cenk Sahinalp.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 256-258, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_25
  • Preprint: arXiv:1504.03080
  • Journal: ReMixT: clone-specific genomic structure estimation in cancer. Andrew W. McPherson, Andrew Roth, Gavin Ha, Cedric Chauve, Adi Steif, Camila P. E. de Souza, Peter Eirew, Alexandre Bouchard-Côté, Sam Aparicio, S. Cenk Sahinalp, Sohrab P. Shah. Genome Biology, 18: 140, 2017.
    • DOI: 10.1186/s13059-017-1267-2
• Ultra-Large Alignments Using Ensembles of Hidden Markov Models. Nam Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy Warnow.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 259-260, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_26
  • Preprint: arXiv:1504.01142
  • Journal: Ultra-large alignments using Phylogeny-aware Profiles. Nam-Phuong D. Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy Warnow. Genome Biology, 16: 124, 2015.
    • DOI: 10.1186/s13059-015-0688-z
• Topological Signatures for Population Admixture. Laxmi Parida, Filippo Utro, Deniz Yorukoglu, Anna Paola Carrieri, David Kuhn, Saugata Basu.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 261-275, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_27
• Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele. Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 276-280, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_28
  • Journal: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele. Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna. PLOS Genetics, 11(9): e1005527, 2015.
    • DOI: 10.1371/journal.pgen.1005527
• Gap Filling as Exact Path Length Problem. Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 281-292, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_29
  • Journal: Gap Filling as Exact Path Length Problem. Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu. Journal of Computational Biology, 23(5): 347-361, 2016.
    • DOI: 10.1089/cmb.2015.0197
• Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. Emre Sefer, Geet Duggal, Carl Kingsford.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 293-308, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_30
  • Journal: Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. Emre Sefer, Geet Duggal, Carl Kingsford. Journal of Computational Biology, 23(6): 425-438, 2016.
    • DOI: 10.1089/cmb.2015.0210
• A Fast and Exact Algorithm for the Exemplar Breakpoint Distance. Mingfu Shao and Bernard M.E. Moret.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 309-322, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_31
  • Journal: A Fast and Exact Algorithm for the Exemplar Breakpoint Distance. Mingfu Shao, Bernard M.E. Moret. Journal of Computational Biology, 23(5): 337-346, 2016.
    • DOI: 10.1089/cmb.2015.0193
• Deciding When to Stop: Efficient Experimentation to Learn to Predict Drug-Target Interactions. Maja Temerinac-Ott, Armaghan W. Naik, Robert F. Murphy.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 323-325, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_32
  • Preprint: arXiv:1504.02406
  • Journal: Deciding when to stop: Efficient experimentation to learn to predict drug-target interactions. Maja Temerinac-Ott, Armaghan W. Naik, Robert F. Murphy. BMC Bioinformatics, 16: 213, 2015.
    • DOI: 10.1186/s12859-015-0650-9
• On the Sample Complexity of Cancer Pathways Identification. Fabio Vandin, Benjamin J. Raphael, Eli Upfal.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 326-337, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_33
  • Journal: On the Sample Complexity of Cancer Pathways Identification. Fabio Vandin, Benjamin J. Raphael, Eli Upfal. Journal of Computational Biology, 23(1): 30-41, 2016.
    • DOI: 10.1089/cmb.2015.0100
• A Novel Probabilistic Methodology for eQTL Analysis of Signaling Networks. Roni Wilentzik and Irit Gat-Viks.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 338-339, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_34
  • Journal: A statistical framework for revealing signaling pathways perturbed by DNA variants. Roni Wilentzik, Irit Gat-Viks. Nucleic Acids Research, 43(11): e71, 2015.
    • DOI: 10.1093/nar/gkv203
• Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. Shuo Yang, Shai Carmi, Itsik Pe’er.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 340-353, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_35
  • Journal: Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. Shuo Yang, Shai Carmi, Itsik Pe’er. Journal of Computational Biology, 23(6): 495-507, 2016.
    • DOI: 10.1089/cmb.2016.0016
• Computational Protein Design Using AND/OR Branch-and-Bound Search. Yichao Zhou, Yuexin Wu, Jianyang Zeng.
  • Proceedings: Research in Computational Molecular Biology. RECOMB 2015. Lecture Notes in Computer Science, vol 9029, pp 354-366, Springer, Cham.
    • DOI: 10.1007/978-3-319-16706-0_36
  • Journal: Computational Protein Design Using AND/OR Branch-and-Bound Search. Yichao Zhou, Yuexin Wu, Jianyang Zeng. Journal of Computational Biology, 23(6): 439-451, 2016.
    • DOI: 10.1089/cmb.2015.0212