ACCEPTED PAPERS
PAPER 001
P. Agarwal and V. Bafna
Detecting non-adjoining correlations within signals in DNA.
PAPER 002
A. Ben-Dor, B. Chor, D. Graur, R. Ophir, D. Pelleg
From four-taxon trees to phylogenies: The case of mammalian evolution.
PAPER 003
G. Benson
An Algorithm for Finding Tandem Repeats of Unspecified Pattern
PAPER 004
B. Berger, T.Leighton
Protein Folding in the Hydrophobic-Hydrophilic (HP) Model is NP-Complete.
PAPER 005
M. Bonet, M.Steel, T.Warnow, S.Yooseph
Better Methods for Solving Parsimony and Compatiblity
PAPER 006
C. C. Chen, J.P. Singh, R.B. Altman
The Hierarchical Organization of Molecular Structure Computations
PAPER 007
P. Crescenzi, D. Goldman, C. Papadimitriou, A. Piccolboni, M. Yannakakis
On the Complexity of Protein Folding.
PAPER 008
D. Fasulo, T. Jiang, R. M. Karp, N. Sharma
Constructing Maps Using the Span and Inclusion Relations.
PAPER 009
A. V. Finkelstein, A. Ya. Badretdinov
How Fast a Protein Chain Can Fold to Its Most Stable Structure?
PAPER 010
R. M. Fye, C.J. Benham
A Formally Exact Method to Numerically Analyze Local Denaturation in
Superhelical DNA
PAPER 011
I. Gelfand, A. Kister, C. Kulikowski, O. Stoyanov
Algorithmic Determination of Core Positions in the VL and VH Domains of
Immunoglobulin Molecules
PAPER 012
R. A. Goldstein, J. M.Koshi, D. P.Mindell
Beyond mutation matrices: Physical-Chemistry based evolutionary models.
PAPER 013
W. N. Grundy
Family-based Homology Detection via Pairwise Sequence Comparison.
PAPER 014
I. Holmes and R. Durbin
Dynamic Programmimg Alignment Accuracy.
PAPER 015
T. Hwa, M. Lassig
Optimal Detection of Sequence Similarity by Local Alignment.
PAPER 016
R.M.Karp, R.Shamir
Algorithms for Optical Mapping.
PAPER 017
P. E. Kearney
Ordinal Beats Additive
PAPER 018
E. Koonin, R. Tatusov, M.Y. Galperin and M.N. Rozanov
Genome analysis using clusters of orthologous groups (COGs)
PAPER 019
J. K.Lee, V. Dancik, M. S. Waterman
Estimation for restriction sites observed by optical mapping using
reversible-jump markov chain monte carlo
PAPER 020
H. Lenhof, K. Reinert, M. Vingron
A Polyhedral Approach to RNA Sequence Structure Alignment.
PAPER 021
A. M. Lesk
Assessment of Ab Initio Protein Structure Prediction.
PAPER 022
R. Liu, T. W. Blackwell and D. J. States
A structure based similarity measure for nucleic acid sequence comparison.
PAPER 023
B. Ma, M. Li, L. Zhang
On Reconstructing Species Trees From Gene Trees In Term of Duplications
PAPER 024
L. Parida, B. Mishra
Partitioning K Clones: Hardness Results and a Practical Solution to
the K-Popultaions Problem
PAPER 025
D. G.Politte, D. R. Maffitt, D. J.States
Estimaiton of Allele Frequencies From Color-Multiplexed Electropherograms
PAPER 026
M. Regnier
A Unified Approach to Word Statistics
PAPER 027
B. A.Reva, A. V.Finkelstein, J. Skolnick
A self-consistent field optimization approach to build energetically and
geometrically correct lattice models of proteins
PAPER 028
I. Rigoutsos,A. Floratos
Motif Discovery in Biological Sequences Without Alignment or Enumeration
PAPER 029
E. Rocke, M. Tompa
An Algorithm for Finding Novel Gapped Motifs in DNA sequences
PAPER 030
M. Sagot, E. W. Myers
Identifying satellites in nucleic acid sequences
PAPER 031
D. Sankoff, M. Blanchette
Multiple genome rearrangement
PAPER 032
F. Sun
Modeling DNA shuffling
PAPER 033
S. R. Sunyaev, I. V. Rodchenkov
Analysis of the Position Dependent Amino Acid Probabilities and its
Application
to the Search for Remote Homologues.
PAPER 034
A. Vologodskii
Maxwell demon and topology simplification by type II topoisomerases.
PAPER 035
W. L.Walker, D. S. Goodsell,E. M.Landaw
The Theoretical Limits of DNA sequence discrimination of Polyamides
PAPER 036
T. D. Wu, S. C. Schmidler, T. Hastie, D. L. Brutlag
Regression Analysis of Multiple Protein Structures
PAPER 037
Y. Xu, D. Xu, E. C. Uberbacher
A New Method for modeling and solving the protein fold recognition problem
PAPER 038
Z. Zhang, P. Berman, W. Miller
Alignments Without Low-Scoring Regions