Accepted Papers

    • Gonzalo Navarro, Mathieu Raffinot
      Fast and Simple Character Classes and Bounded Gaps Pattern Matching, With Application to Protein Searching
       
    • Ron Shamir and Dekel Tsur
      Large Scale Sequencing By Hybridization
       
    • Harmen J. Bussemaker, Hao Li, Eric D. Siggia
      Regulatory Element Detection Using Correlation with Expression
       
    • Ralf Bundschuh
      Rapid Significance Estimation in Local Sequence Alignment with Gaps
       
    • Vladimir Filkov, Steven Skiena, Jizu Zhi
      Analysis Techniques for Microarray Time-Series Data
       
    • Amir Ben-Dor, Nir Friedman, Zohar Yakhini
      Class Discovery in Gene Expression Data
       
    • Yonathan Bilu, Michal Linial
      On the Predictive Power of Sequence Similarity in Yeast
       
    • Richard Beigel, Noga Alon, Mehmet Serkan Apaydin, Lance Fortnow, Simon Kasif
      An Optimal Procedure for Gap Closing in Whole Genome Shotgun Sequencing
       
    • Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko
      A Structural EM Algorithm for Phylogenetic Inference
       
    • O. Kohlbacher, A. Burchardt, A. Moll, A. Hildebrandt, P. Bayer, H.-P. Lenhof
      A NMR-spectra-based Scoring Function for Protein Docking
       
    • Gene Myers
      Comparing Sequence Scaffolds
       
    • Miklós Csürös
      Fast Recovery of Evolutionary Trees With Thousands of Nodes
       
    • Gert Thijs, Kathleen Marchal, Magali Lescot, Stéphane Rombauts, Bart De Moor, P. Rouze, Y. Moreau
      A Gibbs Sampling Method to Detect Over-represented Motifs in the Upstream Regions of Co-expressed Genes
       
    • Michael T. Hallett, Jens Lagergren
      Efficient Algorithms for Lateral Gene Transfer Problems
       
    • Lior Pachter, Marina Alexandersson, Simon Cawley
      Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems
       
    • Phil Bradley, Lenore Cowen, Matthew Menke, Jonathan King, Bonnie Berger
      Predicting The Beta-Helix Fold From Protein Sequence Data
       
    • Alon Efrat, Frank Hoffmann, Klaus Kriegel, Christof Schultz, Carola Wenk
      Geometric Algorithms for the Analysis of 2D-Electrophoresis Gels
       
    • Guo-Hui Lin, Bin Ma, Kaizhong Zhang
      Edit Distance between Two RNA Structures
       
    • Mengxiang Tang, Michael Waterman, Shibu Yooseph
      Zinc Finger Gene Clusters and Tandem Gene Duplication
       
    • Mathieu Blanchette
      Algorithms for Phylogenetic Footprinting
       
    • Paul Pavlidis, Jason Weston, Jinsong Cai, William Noble Grundy
      Gene Functional Classification From Heterogenous Data
       
    • Pavel A. Pevzner, Haixu Tang, Micheal S. Waterman
      A New Approach to Fragment Assembly in DNA Sequencing
       
    • Giuseppe Lancia, Bob Carr, Brian Walenz, Sorin Istrail
      101 Optimal PDB Structure Alignments: a Branch-and-Cut Algorithm for the Maximum Contact Map Overlap Problem
       
    • Ting Chen, Jacob D. Jaffe, George M. Church
      Algorithms for Identifying Protein Cross-links via Tandem Mass Spectrometry
       
    • Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
      A New Approach to Sequence Comparison: Normalized Sequence Alignment
       
    • Ting Chen
      Gene-Finding via Tandem Mass Spectrometry
       
    • Guang Song, Nancy M. Amato
      Using Motion Planning to Study Protein Folding Pathways
       
    • Daniel H. Huson, Knut Reinert, Gene Myers
      The Greedy Path-Merging Algorithm for Sequence Assembly
       
    • Christopher James Langmead, Bruce Randall Donald
      Extracting Structural Information Using Time-Frequency Analysis of Protein NMR Data
       
    • Wentian Li
      DNA Segmentation as A Model Selection Process
       
    • Alan Frieze, Bjarni V. Halldórsson
      Optimal Sequencing by Hybridization in Rounds
       
    • Jeremy Buhler, Martin Tompa
      Finding Motifs Using Random Projections
       
    • Mona Singh, Peter S. Kim
      Towards Predicting Coiled-Coil Protein Interactions
       
    • Yoseph Barash, Nir Friedman
      Context-Specific Bayesian Clustering for Gene Expression Data
       
    • John Kececioglu, Jun Yu
      Separating repeats in DNA sequence assembly
       

    -> RECOMB 2001