| April 11 (Thursday) |
| |
8:30-18:00 |
On-site registration |
| |
9:00-9:10 |
Opening Remarks
Haixu Tang (Indiana University, USA)
|
| |
9:10-10:50 |
Session 1. Chair: Cenk Sahinalp (Simon Fraser University, Canada)
|
| |
9:10-10:10 |
Keynote Talk
Speaker: Colin Collins (Vancouver Prostate Centre, Canada)
Title: Of Men, Mice and Prostate Cancer
|
| |
10:10-10:30 |
Christine Lo, Sangwoo Kim, Shay Zakov and Vineet Bafna
Evaluating Genome Architecture of a Complex Region via Generalized Bipartite Matching
|
| |
10:30-10:50 |
Matthew Hayes and Jing Li
Bellerophon: a hybrid method for detecting interchromosomal rearrangements at base pair resolution using next-generation sequencing data
|
| |
10:50-11:10 |
Tea Break |
| |
11:10-12:30 |
Session 2. Chair: Ben Raphael (Brown University, USA)
|
| |
11:10-11:30 |
Christopher Whelan and Kemal Sonmez
Cloudbreak: A MapReduce Algorithm for Detecting Genomic Structural Variation
|
| |
11:30-11:50 |
Chi-Long Li, Kun-Tze Chen and Chin Lung Lu
Assembling Contigs in Draft Genomes Using Reversals and Block-Interchanges
|
| |
11:50-12:10 |
Guy Bresler, Ma'ayan Bresler and David Tse
Optimal Assembly for High Throughput Shotgun Sequencing
|
| |
12:10-12:30 |
Evgeny Kapun and Fedor Tsarev
De Bruijn Superwalk with Multiplicities Problem is NP-hard
|
| |
12:30-14:30 |
Lunch Break and Poster Session |
| |
12:30-13:30 |
Poster Setup (Guidelines) |
| |
13:30-14:30 |
Poster Session |
| |
14:30-16:10 |
Session 3. Chair: Xiaowo Wang (Tsinghua University, China)
|
| |
14:30-15:30 |
Keynote Talk
Speaker: Bing Ren (UCSD and Ludwig Institute for Cancer Research, USA)
Title: Sequencing the 3D Genome
|
| |
15:30-15:50 |
Haitham Ashoor, Aurélie Hérault, François Radvanyi, Vladimir B. Bajic, Emmanuel Barillot and Valentina Boeva
HMCan: a tool to detect chromatin modifications in cancer samples using ChIP-seq data
|
| |
15:50-16:10 |
Jacob Biesinger, Yuanfeng Wang and Xiaohui Xie
Discovering and Mapping Chromatin States Using a Tree Hidden Markov Model
|
| |
16:10-16:30 |
Tea Break |
| |
16:30-17:50 |
Session 4. Chair: Eleazar Eskin (University of California, Los Angeles, USA)
|
| |
16:30-16:50 |
Alexandru I. Tomescu, Anna Kuosmanen, Romeo Rizzi and Veli Makinen
A Novel Min-Cost Flow Method for Estimating Transcript Expression with RNA-Seq
|
| |
16:50-17:10 |
Jing Zhang, C.-C. Jay Kuo and Liang Chen
WemIQ: a weighted-log-likelihood expectation maximization method for isoform quantification from RNA-Seq data
|
| |
17:10-17:30 |
Yi Li and Xiaohui Xie
A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues
|
| |
17:30-17:50 |
Sponsored Talk
Haisheng Nie, Illumina China
Illumina’s comprehensive End-to-End solutions for Next-Generation Sequencing
|
| |
18:30-20:30 |
Banquet (all registrated participants) |
| |
|
|
| April 12 (Friday) |
| |
8:30-17:00 |
On-site registration |
| |
9:00-10:40 |
Session 4. Chair: Haixu Tang (Indiana University, USA)
|
| |
9:00-10:00 |
Keynote Talk
Speaker: Inna Dubchak (DOE Joint Genome Institute and LBNL, USA)
Title: Efficient visualization of Next-Generation Sequencing data - are we there yet?
|
| |
10:00-10:20 |
Xi Wang and Murray J. Cairns
Gene Set Enrichment Analysis of RNA-Seq Data: Integrating Differential Expression and Splicing
|
| |
10:20-10:40 |
Jie Zhu, Yufang Qin, Taigang Liu, Xiaoqi Zheng and Jun Wang
Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles
|
| |
10:40-11:00 |
Tea Break |
| |
11:00-12:00 |
Session 6. Chair: Chair: Gary Benson (Boston University, USA)
|
| |
11:00-11:20 |
Seunghak Lee, Aurelie Lozano, Prabhanjan Kambadur and Eric Xing
Detecting SNP-SNP Interactions With Piecewise Independence Screening
|
| |
11:20-11:40 |
Yu Zhang
Inferring Population Stratification and Admixture in Sequencing Data with Little Ancestry Information
|
| |
11:40-12:00 |
Eric Bareke, Jean-Francois Spinella, Ramon Vidal, Jasmine Healy, Daniel Sinnett and Miklos Csuros
Joint genotype inference with germline and somatic mutations
|
| |
12:00-14:00 |
Lunch Break and Poster Session |
| |
12:00-13:40 |
Poster Session |
| |
13:40-14:00 |
Poster Removal |
| |
14:00-15:20 |
Session 7. Chair: Weizhong Li (University of California, San Diego, USA)
|
| |
14:00-14:20 |
Roy Lederman
A Random-Permutations-Based Approach to Fast Read Alignment
|
| |
14:20-14:40 |
Christina Ander, Ole Schulz-Trieglaff, Jens Stoye and Anthony Cox
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences
|
| |
14:40-15:00 |
Yongchu Liu, Jiangtao Guo, Gangqing Hu and Huaiqiu Zhu
Gene Prediction in Metagenomic Fragments Based on the SVM Algorithm
|
| |
15:00-15:20 |
Manuel Allhoff, Alexander Schoenhuth, Marcel Martin, Ivan G. Costa, Sven Rahmann and Tobias Marschall
Discovering Motifs that Induce Sequencing Errors
|
| |
15:20-15:40 |
Tea Break |
| |
15:40-16:40 |
Session 8. Chair: Rui Jiang (Tsinghua University, China)
|
| |
15:40-16:00 |
Li Song and Liliana Florea
CLASS: Constrained Transcript Assembly of RNA-seq Reads
|
| |
16:00-16:20 |
Gary Benson, Yevgeniy Gelfand, Joshua Loving and Yozen Hernandez
VNTRseek: A Computational Pipeline to Detect Tandem Repeat Variants in Next-Generation Sequencing Data: Analysis of the 454 Watson Genome
|
| |
16:20-16:40 |
Sheng Li, Francine Garrett-¬bakelman, Altuna Akalin, Paul Zumbo, Ross Levine, Ari Melnick and Christopher Mason
eDMR: An optimized algorithm for detecting and annotating regional differential methylation
|
| |
16:40-17:00 |
Closing Ceremony |
