The following papers were accepted for presentation at RECOMB 2009 and published in the proceedings (LNCS 5541):
- Ali Bashir et al. - Optimizing PCR Assays
- Sharon Bruckner et al. - Topology-Free Querying
- Cédric Chauve et al. - New Perspectives on Genome Rearrangements
- Constantinos Daskalakis et al. - Phylogenies without Branch Bounds
- Alexandre Donzé et al. - Parameter Synthesis
- Banu Dost et al. - Shared Peptides
- Dan Gusfield et al. - Perfect Phylogeny
- Zengyou He et al. - Peptide Mass Fingerprinting
- Benjamin J. Hescott et al. - Evaluating Between-Pathway Interaction
- Fereydoun Hormozdiari et al. - Structural Variation
- Rami Jaschek et al. - Spatial Clustering
- Eun Yong Kang et al. - Yeast Genes
- Hyun Min Kang et al. - Genotype Imputation
- Eagu Kim et al. - Aligning Protein Sequences
- Bonnie Kirkpatrick et al. - Complex Pedigrees
- Mathieu Lavallée-Adam et al. - Protein-Protein Interaction
- Yong Lu et al. - Innate Immune Response
- Veli Mäkinen et al. - Storage and Retrieval
- Mathias Möhl et al. - RNA Pseudoknots
- Saket Navlakha et al. - Hierarchical Tree Decompositions
- Nicholas D. Pattengale et al. - Bootstrap Replicates
- Jian Peng et al. - Boosting Protein Threading
- Snehit Prabhu et al. - Overlapping Pools
- Arvind Ramanathan et al. - Mining Collective Behaviors
- Tali Raveh-Sadka et al. - Transcription Regulation
- Sheila M. Reynolds et al. - DNA Periodicity
- Itai Sharon et al. - Functional Analysis of Metagenomes
- Tetsuo Shibuya et al. - Searching Protein 3-D Structures
- Suzanne S. Sindi et al. - Inversion Polymorphisms
- Oliver Stegle et al. - Microarray Time Series
- Krister M. Swenson et al. - Sorting Signed Permutations
- Jérôme Waldispühl et al. - Simultaneous Alignment
- Osvaldo Zagordi et al. - Deep Sequencing
- Xiang Zhang et al. - COE
- Feng Zhao et al. - Ab Initio Folding
- Wei Zheng et al. - Protein Fragment Swapping
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