Satellites

Four recurrent satellites events of RECOMB will be held jointly with the meeting on this 2018 edition. They will be held before the main event, on the 19-20 April at the Campus Pierre et Marie Curie, Sorbonne Université, Quartier Jussieu, Paris, France.

Satellites will be hosted at the First floor of Tower 44, in rooms 106 (RECOMB-Seq), 108 (RECOMB-CCB), 107 (RECOMB-Genetics) and 109 (Dream Challenges and Epidemium@RECOMB).

RECOMB-Seq

This workshop brings together researchers from computer science, mathematics, statistics and the life sciences to discuss emerging frontiers in next generation sequencing.
[Satellite Webpage]

RECOMB-Genetics

This meeting focuses on the current research at the intersection of genetics, computer science, statistics, and related fields in gathering, analyzing, and applying SNP and haplotype data to problems in medicine and basic research.
[Satellite Webpage]

RECOMB-CCB

This meeting focuses on applying statistical, mathematical, and algorithmic approaches to improve our understanding of cancer and on the development of useful, effective and efficient new methods in this area.
[Satellite Webpage]

DREAM challenges and EPIDEMIUM@RECOMB

The meeting will focus on proteogenomics, single cell systems biology and cancer epidemiology, and how crowdsourced science, data sharing and a culture of collaboration can help advance research in these fields. We will highlight the solutions of the top performing strategies in the Epidemium program in cancer epidemiology and the recent NCI-CPTAC Proteogenomics DREAM Challenge. We will also brainstorm as a community on the possibility of organizing a DREAM challenge on Single Cell Systems Biology.
[Satellite Webpage]

Thursday April 19th
RECOMB-SEQ I

Satellite registration
9 h 45 min - 10 h 30 min

Check in
Regular talks
10 h 30 min - 11 h 20 min
Highlight talk
11 h 20 min - 11 h 50 min
Lunch break
11 h 50 min - 14 h 00 min

Roam the streets of Paris...
Alexis Battle (Keynote)
14 h 00 min - 15 h 00 min

Shared with RECOMB-Genetics
Regular talks
15 h 10 min - 16 h 00 min
Coffee break
16 h 00 min - 16 h 30 min
Short Talks
16 h 30 min - 17 h 30 min

Thursday April 19th
DREAM challenges and EPIDEMIUM@RECOMB I

Satellite registration
13 h 00 min - 14 h 00 min
Welcome and Objectives
14 h 00 min - 14 h 15 min

Gustavo Stolovitzky from the DREAM Challenges and Olivier de Fresnoye from EPIDEMIUM welcome you to the meeting
Annabelle Malherbe
14 h 15 min - 14 h 30 min

Using the Netvibes Platform to crowdsource science - Dassault Systems: The 3D Experience company
Varsha Khodiyar (Data Curation Editor, Scientific Data)
14 h 30 min - 14 h 45 min

The challenge of sharing data well, how publishers can help
Gustavo Stolovitzky (DREAM Challenges)
14 h 45 min - 15 h 15 min

Crowdsourcing Biomedical Research
Olivier de Fresnoye (EPIDEMIUM)
15 h 15 min - 15 h 45 min

New path to cancer research
Coffee break
15 h 45 min - 16 h 20 min
Best performer Epidemium 2018 - Open Cancer
16 h 20 min - 16 h 40 min

Benjamin Schannes, Martin Micalef, Lino Galiana and Benoît Rolland
Best performer Epidemium 2018 - Open Cancer - Grand prize
Best performer Epidemium 2018 - IDEA
16 h 40 min - 17 h 00 min

Thibaud Blanchard (Epidemium)
Best performer Epidemium 2018 - IDEA - Second prize
Yohann Sitruk, Olga Kokshagina (Keynote, discussion)
17 h 00 min - 18 h 00 min

Open science with community : avoiding the pitfalls when organizing a collaborative scientific process

Thursday April 19th
CCB@RECOMB I

Satellite registration
13 h 00 min - 13 h 10 min
Session 1 - Genomics I
13 h 10 min - 15 h 00 min
Poster session & coffee
15 h 00 min - 16 h 30 min
Session 2 - Immunotherapy and other translational applications
16 h 30 min - 17 h 30 min
Marta Lukza (Keynote)
17 h 30 min - 18 h 30 min

Predicting cancer evolution from immune interactions

Thursday April 19th
RECOMB Genetics I

Welcome address
13 h 50 min - 14 h 00 min
Alexis Battle (Keynote)
14 h 00 min - 15 h 00 min

Shared with RECOMB-SEQ
Session 1
15 h 00 min - 16 h 00 min
Coffee break
16 h 00 min - 16 h 30 min
Lluis Quintana-Murci (Keynote)
16 h 30 min - 17 h 30 min

Population genetics and genomics of immunity to infection

Friday April 20th
RECOMB-SEQ II

Regular talks
9 h 30 min - 10 h 20 min
Coffee break
10 h 20 min - 10 h 50 min
Short Talks
10 h 50 min - 11 h 50 min
Highlight talk
11 h 30 min - 11 h 45 min
Lunch break
11 h 45 min - 13 h 45 min

Roam the streets of Paris...
Olivier Jaillon (Keynote)
13 h 45 min - 14 h 45 min
Regular talks
15 h 00 min - 15 h 50 min
Coffee break
15 h 50 min - 16 h 20 min
Poster lightning talks
16 h 20 min - 16 h 40 min
Poster session
16 h 45 min - 18 h 00 min
Opening reception + Registration
18 h 00 min - 20 h 30 min

Open to both RECOMB and satellites participants

Friday April 20th
DREAM challenges and EPIDEMIUM@RECOMB II

Henry Rodriguez
9 h 00 min - 9 h 10 min

Introduction to the Proteogenomics challenge
Ruedi Aebersold (Keynote)
9 h 10 min - 9 h 50 min

The proteome in context
Julio Saez-Rodriguez (DREAM-CPTAC)
9 h 50 min - 10 h 05 min

Overview DREAM-CPTAC Proteogenomics Challenge
Sunkyu Kim (DREAM-CPTAC)
10 h 05 min - 10 h 20 min

Best Method & Collaborative phase Subchallenge 1
Predicting Protein Abundance using Matrix Factorization and Biological Networks
Daniel Quang (DREAM-CPTAC)
10 h 20 min - 10 h 35 min

Best Method’s SubChallenge’s 2&3
Modeling the Determinants of Protein and Phosphoprotein Abundance in Cancers
Francesca Petralia (DREAM CPTAC)
10 h 35 min - 10 h 50 min

Community Phase of NCI-CPTAC Dream Proteogenomics Sub-Challenge 2 and Sub-Challenge 3
Coffee break
10 h 50 min - 11 h 15 min
John Moult
11 h 15 min - 11 h 45 min

CAGI and CASP - surprises and lessons
David Kreil (TBC)
11 h 45 min - 12 h 15 min

CAMDA, an open-ended data analysis challenge of complex data sets
Nikolaus Rajewsky (Keynote)
12 h 15 min - 12 h 55 min

Single cell sequencing to discover mechanisms of gene regulation
Discussion
12 h 55 min - 13 h 25 min

Opportunities in single cell data and other emergent data modalities for crowdsourcing
Lunch break
13 h 25 min - 14 h 30 min

Roam the streets of Paris...
Workshop
14 h 30 min - 18 h 30 min

Workshop: Designing your collaborative open science campaign
Opening reception + Registration
18 h 00 min - 20 h 30 min

Open to both RECOMB and satellites participants

Friday April 20th
CCB@RECOMB II

Session 3 - Single cell approaches
9 h 00 min - 10 h 20 min
Coffee break
10 h 20 min - 10 h 50 min
Session 4 - Imaging
10 h 50 min - 12 h 40 min
Juan C. Caicedo (Keynote)
11 h 30 min - 12 h 30 min

Variant Impact Phenotyping using Deep Morphological Profiling
Lunch break
12 h 40 min - 14 h 00 min

Roam the streets of Paris...
Session 5 - Functional and systems biology
14 h 00 min - 15 h 20 min
Coffee break
15 h 20 min - 15 h 50 min
Session 6 - Genomics II
15 h 50 min - 18 h 00 min
Nuria Lopez-Bigas (Keynote)
17 h 10 min - 18 h 10 min

Coding and non-coding cancer mutations
Opening reception + Registration
18 h 00 min - 20 h 30 min

Open to both RECOMB and satellites participants

Friday April 20th
RECOMB Genetics II

Romain Koszul (Keynote)
9 h 10 min - 10 h 10 min
Coffee break
10 h 10 min - 10 h 40 min
Laurent Excoffier (Keynote)
10 h 40 min - 11 h 40 min

The perils of inferring past demography from genomic data
Session 2
11 h 40 min - 12 h 20 min
Lunch break
12 h 20 min - 13 h 50 min

Roam the streets of Paris...
Session 3
13 h 50 min - 15 h 10 min
Coffee break
15 h 10 min - 15 h 40 min
Jian Yang (Keynote)
15 h 40 min - 16 h 40 min
Poster session
16 h 40 min - 18 h 00 min
Opening reception + Registration
18 h 00 min - 20 h 30 min

Open to both RECOMB and satellites participants

Thursday April 19th RECOMB-SEQ I	Thursday April 19th DREAM challenges and EPIDEMIUM@RECOMB I	Thursday April 19th CCB@RECOMB I	Thursday April 19th RECOMB Genetics I
Satellite registration 9 h 45 min - 10 h 30 min Check in





Regular talks 10 h 30 min - 11 h 20 min





Highlight talk 11 h 20 min - 11 h 50 min



Lunch break 11 h 50 min - 14 h 00 min Roam the streets of Paris...









	Satellite registration 13 h 00 min - 14 h 00 min	Satellite registration 13 h 00 min - 13 h 10 min
		Session 1 - Genomics I 13 h 10 min - 15 h 00 min




			Welcome address 13 h 50 min - 14 h 00 min

Alexis Battle (Keynote) 14 h 00 min - 15 h 00 min Shared with RECOMB-Genetics	Welcome and Objectives 14 h 00 min - 14 h 15 min Gustavo Stolovitzky from the DREAM Challenges and Olivier de Fresnoye from EPIDEMIUM welcome you to the meeting		Alexis Battle (Keynote) 14 h 00 min - 15 h 00 min Shared with RECOMB-SEQ

	Annabelle Malherbe 14 h 15 min - 14 h 30 min Using the Netvibes Platform to crowdsource science - Dassault Systems: The 3D Experience company

	Varsha Khodiyar (Data Curation Editor, Scientific Data) 14 h 30 min - 14 h 45 min The challenge of sharing data well, how publishers can help

Friday April 20th RECOMB-SEQ II	Friday April 20th DREAM challenges and EPIDEMIUM@RECOMB II	Friday April 20th CCB@RECOMB II	Friday April 20th RECOMB Genetics II
	Henry Rodriguez 9 h 00 min - 9 h 10 min Introduction to the Proteogenomics challenge	Session 3 - Single cell approaches 9 h 00 min - 10 h 20 min
	Ruedi Aebersold (Keynote) 9 h 10 min - 9 h 50 min The proteome in context		Romain Koszul (Keynote) 9 h 10 min - 10 h 10 min


Regular talks 9 h 30 min - 10 h 20 min

	Julio Saez-Rodriguez (DREAM-CPTAC) 9 h 50 min - 10 h 05 min Overview DREAM-CPTAC Proteogenomics Challenge

	Sunkyu Kim (DREAM-CPTAC) 10 h 05 min - 10 h 20 min Best Method & Collaborative phase Subchallenge 1 Predicting Protein Abundance using Matrix Factorization and Biological Networks
			Coffee break 10 h 10 min - 10 h 40 min
Coffee break 10 h 20 min - 10 h 50 min	Daniel Quang (DREAM-CPTAC) 10 h 20 min - 10 h 35 min Best Method’s SubChallenge’s 2&3 Modeling the Determinants of Protein and Phosphoprotein Abundance in Cancers	Coffee break 10 h 20 min - 10 h 50 min

	Francesca Petralia (DREAM CPTAC) 10 h 35 min - 10 h 50 min Community Phase of NCI-CPTAC Dream Proteogenomics Sub-Challenge 2 and Sub-Challenge 3
			Laurent Excoffier (Keynote) 10 h 40 min - 11 h 40 min The perils of inferring past demography from genomic data
Short Talks 10 h 50 min - 11 h 50 min Highlight talk 11 h 30 min - 11 h 45 min	Coffee break 10 h 50 min - 11 h 15 min	Session 4 - Imaging 10 h 50 min - 12 h 40 min Juan C. Caicedo (Keynote) 11 h 30 min - 12 h 30 min Variant Impact Phenotyping using Deep Morphological Profiling



	John Moult 11 h 15 min - 11 h 45 min CAGI and CASP - surprises and lessons


			Session 2 11 h 40 min - 12 h 20 min
Lunch break 11 h 45 min - 13 h 45 min Roam the streets of Paris...	David Kreil (TBC) 11 h 45 min - 12 h 15 min CAMDA, an open-ended data analysis challenge of complex data sets



	Nikolaus Rajewsky (Keynote) 12 h 15 min - 12 h 55 min Single cell sequencing to discover mechanisms of gene regulation		Lunch break 12 h 20 min - 13 h 50 min Roam the streets of Paris...


		Lunch break 12 h 40 min - 14 h 00 min Roam the streets of Paris...

	Discussion 12 h 55 min - 13 h 25 min Opportunities in single cell data and other emergent data modalities for crowdsourcing



	Lunch break 13 h 25 min - 14 h 30 min Roam the streets of Paris...


Olivier Jaillon (Keynote) 13 h 45 min - 14 h 45 min			Session 3 13 h 50 min - 15 h 10 min

Friday April 20th RECOMB-SEQ II	Friday April 20th DREAM challenges and EPIDEMIUM@RECOMB II	Friday April 20th CCB@RECOMB II	Friday April 20th RECOMB Genetics II
			Coffee break 10 h 10 min - 10 h 40 min
Coffee break 10 h 20 min - 10 h 50 min		Coffee break 10 h 20 min - 10 h 50 min



	Coffee break 10 h 50 min - 11 h 15 min



			Coffee break 15 h 10 min - 15 h 40 min
		Coffee break 15 h 20 min - 15 h 50 min



Coffee break 15 h 50 min - 16 h 20 min

Friday April 20th RECOMB-SEQ II	Friday April 20th DREAM challenges and EPIDEMIUM@RECOMB II	Friday April 20th CCB@RECOMB II	Friday April 20th RECOMB Genetics II
Opening reception + Registration 18 h 00 min - 20 h 30 min Open to both RECOMB and satellites participants	Opening reception + Registration 18 h 00 min - 20 h 30 min Open to both RECOMB and satellites participants	Opening reception + Registration 18 h 00 min - 20 h 30 min Open to both RECOMB and satellites participants	Opening reception + Registration 18 h 00 min - 20 h 30 min Open to both RECOMB and satellites participants

Satellites

RECOMB-Seq

RECOMB-Genetics

RECOMB-CCB

DREAM challenges and EPIDEMIUM@RECOMB

Thursday April 19th RECOMB-SEQ I

Thursday April 19th DREAM challenges and EPIDEMIUM@RECOMB I

Thursday April 19th CCB@RECOMB I

Thursday April 19th RECOMB Genetics I

Friday April 20th RECOMB-SEQ II

Friday April 20th DREAM challenges and EPIDEMIUM@RECOMB II

Friday April 20th CCB@RECOMB II

Friday April 20th RECOMB Genetics II