Accepted Posters
- Rufus Vinod, Syeda Yumna Farrukh and Roquyya Gul. Human VEGF-A121 Dimerization by SUMO Fusion Technology in Prokaryotic System
- Franziska Singer, Michael Prummer, Miquel Busquets Lopez, Christian Stirnimann and Daniel Stekhoven. NEXUS: supporting personalized medicine with state-of-the art technologies
- Franziska Kreuchwig, Sebastiaan van Heesch, Eleonora Adami, Allison Faber, Sebastian Schäfer, Matthias Heinig, Giannino Patone, Susanne Blachut, Anita Müller, Michal Pravenec and Norbert Hübner. QTL mapping to elucidate genetic basis of translational regulation in heart failure
- Roni Wilentzik and Irit Gat-Viks. The genetic basis of individual variation in transcriptional responses: a network-based approach
- Jie Ren, Fengzhu Sun, Gesine Reinert, Minghua Deng, Kai Song and Chuck Cannon. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics
- Wangshu Zhang, Marcelo P. Coba and Fengzhu Sun. Inference of domain-disease associations from domain-protein, protein-disease and disease-disease relationships
- Brian Peng He. Gene regulation in different cell states: from chromatin structure to transcription dynamics
- Daqing Wang, Amy Webb and Audrey Papp. Transcriptome sequencing analysis in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles
- Ashley Cass, Jae Hoon Bahn, Xianzhi Lin, Jae-Hyung Lee, Christopher Greer, Yun-Hua Esther Hsiao and Xinshu Xiao. Endogenous small RNAs target coding and noncoding transcripts to induce endonucleolytic cleavage
- Marcin Świstak and Jerzy Tiuryn. TCRα enhancer substructures are conserved in the genomes of mouse and human
- Bo Zhang and Yi-Chieh Wu. Bayesian Estimation of Evolutionary Histories under Duplication, Loss, and Coalescence
- Fabian Schmich, Gunter Merdes and Niko Beerenwinkel. netprioR: Integrative graph–based prioritisation of perturbation screen hits
- Debjit Ray. Predictive Pathogen Biology: Genome-Based Prediction of Pathogenic Potential and Countermeasures Targets
- Yun-Hua Esther Hsiao, Jae Hoon Bahn, Xianzhi Lin, Tak-Ming Chan, Rena Wang and Xinshu Xiao. Alternative Splicing Modulated by Genetic Variants Demonstrates Accelerated Evolution Regulated by Highly Conserved Proteins
- Christos Dimitrakopoulos and Niko Beerenwinkel. Interaction Network Analysis links tumor mutations to expression patterns
- Hatice Osmanbeyoglu, Eneda Toska, Jose Baselga and Christina Leslie. Modeling the impact of somatic alterations in human cancers
- Ying-Tsang Lo and Tun-Wen Pai. Prediction of Conformational Epitope using a Novel Spiral Feature Vector
- Dmitrii Meleshko, Hosein Mohimani, Marnix Medema and Pavel Pevzner. npSPAdes: a new tool for biosynthetic gene cluster discovery from metagenomic data
- Aliz Rao and Stanley Nelson. Calculating the statistical significance of rare variants causal for Mendelian disorders
- Julia Salzman. Statistical Detection of circular and linear RNA variants
- Nadav Rappoprt and Atul Butte. Predict demographic features from lab tests
- Huy Dinh, Yaping Liu, Fides Lay, Peter Jones and Benjamin Berman. A software toolkit for NOMe-seq including single-molecule analysis of DNA methylation and nucleosome positioning
- Sangwoo Kim and Hojung Nam. The role of loss-of-function variants in ethnic specific enzymatic genes
- Sumana Srivatsa, Fabian Schmich, Jack Kuipers and Niko Beerenwinkel. Pathway reconstruction from combinatorial gene knockdowns exploiting siRNA off-target effects
- Simon Dirmeier and Niko Beerenwinkel. Integrated identification of positive-sense RNA-viral dependency factors from perturbation data
- Tommy Hansen and Fabio Vandin. NoMAS: An Efficient Algorithm to Find Mutated Subnetworks Associated with Survival in Cancer
Cong-Doan Truong, Hung-Cuong Trinh and Yung-Keun Kwon. Topological and Dynamical Characteristics of a Large-Scale Signaling Network by Module Analysis- Mithun Mitra, Elizabeth L. Johnson, David C. Corney, David G. Robinson, Daniel G. Taylor, Wei Wang, Sandra Batista and Hilary A. Coller. Cell cycle exit to a quiescent state involves alternative isoform usage
- Danny Zeevi, Joshua Bloom, Ephrat Levy-Lahad, David Zangen and Leonid Kruglyak. Analysis of the genetic basis of height in large Jewish pedigrees
- Qi Yang, Joseph Boland, Michael Cullen and Meredith Yeader. HPV_ NGS, detecting and annotating genetics variant of HPV16 whole Genome sequences
- Lisa Gai, Serghei Mangul, Eun Yong Kang, Susana Eyheramendy and Eleazar Eskin. Accounting for linkage disequilibrium when estimating the heritability contribution of a genomic region
- Minseung Kim, Navneet Rai, Violeta Zorraquino, Xiaokang Wang and Ilias Tagkopoulos. Multi-omics integration and optimal experimental design accurately predicts cellular and growth dynamics
- Artur Jaroszewicz and Jason Ernst. Probabilistic modeling of parallel ChIP-Seq data enables discrimination of direct and indirect binding events
- Reazur Rahman, Gung-Wei Chirn, Abhay Kanodia and Nelson Lau. Unique transposon landscapes are pervasive across Drosophila melanogaster genomes
- Monika Sekelja, Jonas Paulsen and Philippe Collas. Revealing cell subpopulations and their chromatin structures by applying deconvolution on Hi-C and ChIP-seq data
- Ortal Shnaps, Eyal Perry, Dana Silverbush and Roded Sharan. Inference of Personalized Drug Targets via Network Propagation
- Shan Sabri, Jason Ernst and Kathrin Plath. High-throughput Profiling of Single-cells Reprogramming to Pluripotency
- Dong-Yeon Cho, Hangnoh Lee, Damian Wojtowicz, Steven Russell, Brian Oliver and Teresa M. Przytycka. Interplay between copy number, dosage compensation and expression noise in Drosophila
- Federica Martina, Francesca Cordero, Emilio Siena, Gianfranco Balbo and Duccio Medini. A multilayer gene-network predicts the immune quality response to vaccination
- Douglas Arneson, Anindya Bhattacharya, Le Shu, Ville-Petteri Makinen and Xia Yang. Mergeomics: A Webserver for Identifying Pathological Pathways, Networks, and Key Regulators via Omics Data Integration
- Forough Firoozbakht, Iman Rezaeian, Alioune Ngom and Luis Rueda. Breast Cancer Network Biomarker Identification by Incorporating Genomics, Transcriptomics and Proteomics Data
- Sang Cheol Kim and Seong Beom Cho. COEX-seq: COnvert a variety of measurements of gene EXpression in RNA-seq
- Erfan Sayyari and Siavash Mirarab. Fast coalescent-based computation of local branch support from quartet frequencies
- Pan-Gyu Kim, Gunhwan Ko, Jongcheol Yoon, Byungwook Lee and Ryan W. Kim. The workflow system based on Hadoop for bio-big data analysis
- Bingqiang Liu and Qin Ma. Development of Computational Tools in DNA motif identification and analyses
- Ali Yousefian-Jazi and Jinwook Choi. FCM-EM: A Novel Approach for Discovering DNA Motifs
- Thomas Conway, Benjamin Goudey and Justin Bedo. K-mer prefixes for alignment free homology on bacterial data
- Yoichi Takenaka, Shigeto Seno and Hideo Matsuda. Dynamic Analysis of Gene Regulations using Leaving-One-Out Expression Profile
- Suresh B Vepuri and Mahmoud E Soliman. Development of New lead molecule for the inhibition of human Aldose Reductase- Virtual screening, X-ray structure and Induced fit Docking
- Kazumasa Saito, Shigeto Seno, Yoichi Takenaka and Hideo Matsuda. Bayesian Network Inference from gene expression profiles with a small number of samples
- Nan Hua, Long Pei, Ke Gong, Harianto Tjong, Chao Dai, Qingjiao Li, Xianghong Jasmine Zhou and Frank Alber. Unraveling human genome architecture with population-based modeling
- Robert Schöpflin, Guillaume Andrey, Verena Heinrich, Daniel Ibrahim, Christina Paliou, Bjørt Kragesteen, Myriam Hochradel, Malte Spielmann, Stefan Mundlos and Martin Vingron. Characterizing the regulatory landscapes of limb-associated genes using Capture-C
- Phelim Bradley and Dr Zamin Iqbal. Mykrobe predictor: Rapid antibiotic-resistance predictions from genome sequence data using de Bruijn graphs
- Yazhou Sun and Mikaela Rosen. Identification of Novel Functional Elements Inside Human Genome with RNA-Seq
- Menglu Li, Angel C.Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Kevin Y. Yip, Ting Fung Chan and Siu Ming Yiu. Towards a more accurate error model for BioNano optical maps
- Norbert Dojer. Learning Bayesian networks from datasets joining continuous and discrete variables
- Junho Kim, Ju Heon Maeng, Jae Seok Lim, Hyeonju Son, Junehawk Lee, Jeong Ho Lee and Sangwoo Kim. Systematic identification of false somatic variants caused by vector contamination
- Pasquale Laise, Pietro Lo Riso, Vivek Das, Michela Lupia, Fabrizio Bianchi, Nicoletta Colombo, Ugo Cavallaro and Giuseppe Testa. Reconstruction of the epigenetic regulatory circuits in ovarian cancer
- Jochen Singer, Katharina Jahn, Jack Kuipers and Niko Beerenwinkel. Allele frequency tree reconstruction for single-cell data
- Rafal Zaborowski and Bartek Wilczynski. New method for systematic detection of Hi-C differential interactions
- Michael Cheng, Sheng-Yuan Chiu, Menglu Li, Siu Ming Yiu, Liqing Zhang and Wing-Kai Hon. WebRTG: A Web Front-end for RNA Structure Prediction using Rectangle Tree Gramma
- Vinaya Vijayan, Siu Ming Yiu and Liqing Zhang. Framework for integration of genome and exome data to improve the identification of somatic variants
- Johannes Helmuth, Li Na and Ho-Ryun Chung. normR: Regime enrichment calling for ChIP-seq data
- Murodzhon Akhmedov, Roberto Montemanni and Ivo Kwee. Application of Steiner Trees and Deep Learning for DLBCL Cancer subtype Classification
- Jongin Lee, Mikang Sim and Jaebum Kim. Efficient pairwise whole-genome alignment by utilizing existing alignments of relevant species
- Anton Bankevich, Dmitry Antipov, Sergey Nurk and Pavel Pevzner. New members of SPAdes assembly tools family
- Geethika Yalamanchili and Christopher Rao. Selective promoter recognition by RpoS: A Biological Puzzle
- Serghei Mangul, Nicolas Strauli, Harry Yang, Ryan Hernandez, Roel Ophoff, Eleazar Eskin and Noah Zaitlen. Examining lost reads to survey the microbiome and immune components of the human body across 43 human sites from 175 individuals
- Charles Labuzzetta, Margaret Antonio, Dennis Watson and Paul Anderson. MVPq: A novel filtering method for isoform-based features from alternative splicing events enhances phenotype prediction accuracy via machine learning techniques in RNA-Seq experiments
- Yana Safonova, Alexander Shlemov, Andrey Bzikadze, Sergey Bankevich and Pavel Pevzner. A novel toolkit for analysis of adaptive immune repertoires using immunosequencing and mass spectra data
- Idoia Ochoa, Mikel Hernaez, Rachel Goldfeder, Tsachy Weissman and Euan Ashley. Denoising of Quality Scores for Boosted Inference and Reduced Storage
- Adriana Sperlea and Jason Ernst. Systematic prediction of putative regulatory regions from multiple sequence alignments
- Chee Lee, Maureen Sartor, Laura Scott and Yanxiao Zhang. Transposons, segmental duplications and sequence mappability, and their relationship with gene length and function
- Margaret Antonio, Charles Labuzzetta, Dennis Watson and Paul Anderson. METRO: A pipeline for comparative meta-analysis and visualization of gene and pathway expression in RNA-Seq experiments
- Rachelly Normand, Renaud Gaujoux, Elina Starosvetsky, Gali Shalev-Malul and Shai Shen-Orr. Found In Translation: Statistical model for improved translation from mouse gene expression to human biology
- Kedar Tatwawadi, Mikel Hernaez, Idoia Ochoa and Tsachy Weissman. Fast retrieval from compressed collections of genomic variants
- Dominik Budday, Sigrid Leyendecker and Henry van Den Bedem. Clash- and constraint-guided motion planning reveals conformational transition pathways in proteins
- Petko Fiziev and Jason Ernst. Systematic Detection of Spatiotemporal Patterns of Epigenetic Changes
- Daniel Hogan, Bharathikumar Vellalore, Clarence Geyer and Anthony Kusalik. An algorithm for hierarchical clustering of short sequences generated from antibody phage display experiments
- Alexander Goncearenco, Stefan Wuchty, Peter Uetz and Anna R. Panchenko. Protein-protein interactomes with structurally resolved interfaces
- Huo Li, Steven Lockton, Soma Ray, Gilda Shayan, Norm Allaire, Mark Cosentino, Shirley Philips, Jaya Goyal, Chris Roberts, Tim Harris, Martin Beaulieu and John Carulli. Identification of a microRNA biomarker signature that differentiates relapsing-remitting Multiple Sclerosis patients from healthy volunteers
- Olaitan Awe, Segun Fatumo and Angela Makolo. Genetic Interrelationships between Zika Virus, Dengue Virus, Chikungunya Virus and Yellow Fever Virus Strains
- Alexander Goncearenco, Stephanie L. Rager, Quing-Xiang Sang, Igor B. Rogozin and Anna R. Panchenko. Probabilistic context-specific models of somatic mutations in cancer
- Julia Herman-Izycka, Michal Wlasnowolski and Bartek Wilczynski. Predicting mammalian enhancers from sequence can be biased by the information specific to promoter sequences
- Weiling Li, Raunaq Malhotra, Mary Poss and Raj Acharya. Mining mapped reads in 1000 Genomes data for accurately predicting polymorphic human endogenous retroviruses
- David Seifert and Niko Beerenwinkel. Aligning NGS reads of viral populations experiencing high insertion-deletion rates
- Mario Banuelos, Rubi Almanza, Lasith Adhikari, Suzanne Sindi and Roummel Marcia. Predicting Structural Variants In Genomic Data Using Sparsity and Relatedness Constraints
- Steven Lakin, Rob Raymond, Noelle Noyes, Enrique Doster, Zaid Abdo, Keith Belk, Paul Morley and Christina Boucher. Quantification of antimicrobial resistance profiles from metagenomic sequencing data using Hidden Markov Models and post hoc filtering
- Agnieszka Mykowiecka, Pawel Szczesny and Pawel Gorecki. Inference of gene-species relationships using tree reconciliation
- Aleksandra Gruca and Marek Sikora. RuleGO2 – the algorithm and platform for verification of user hypothesis of co-existence of functional pathways in gene set description
- Ilia Minkin, Son Pham and Paul Medvedev. TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes
- Jimin Song, Chicheng Zhang, Kamalika Chaudhuri and Kevin Chen. Spectral Learning Algorithms for Comparative Epigenomics
- Renaud Gaujoux, Francesco Vallania, Naama Meimon, Elina Starosvetsky, Edmond Sago, Yehuda Chowers, Purvesh Khatri and Shai Shen-Orr. Immune cell subset signatures make for robust predictive biomarkers in IBD
- Rares Turliuc, Bogdan Grecu and Adriana Climescu-Haulica. Dynamic classification based on human Gene Damage Index: a physiological approach
- Raunaq Malhotra, Manjari Mukhopadhyay, Mary Poss and Raj Acharya. A frame-based representation of genomic sequences for removing errors and detecting low frequency variants in samples
- Yang Lu, Ting Chen, Jed Fuhrman and Fengzhu Sun. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge
- Katelyn Hughes, Oleksandr Narykov, Nathan Johnson and Dmitry Korkin. FUELCAN: Determining the oncogenic potential of a fusion event via semi-supervised learning
- Yacidzohara Rodriguez, Ricardo González-Mendez and Carmen Cadilla. Evolution of the Twist Subfamily Vertebrate Proteins: Discovery of a Signature Motif and Origin of the Twist1 Glycine-rich Motifs in the Amino-terminus Disordered Domain
- Sajad Mirzaei and Yufeng Wu. A New Method for Inferring Local Genealogical Tree Topologies from Haplotypes with the Presence of Recombination
- Abed Alkhateeb, Iman Rezaeian and Luis Rueda. Nonnegative Matrix Factorization Clustering for Time Series Cancer Progression Data
- Jennifer Zou, Eun Yong Kang, Serghei Mangul, Eyal Ben-David, Buhm Han, Aldons Lusis, Sagiv Shifman, Jason Ernst and Eleazar Eskin. Utilizing allele specific expression to identify cis-regulatory variants
- Xinan Yang, Bin Wang and John Cunningham. Effective integration of genome-wide histone modification with transcriptional profiles
- Jennifer Rogers, Andrew Fishberg, Nora Youngs and Yi-Chieh Wu. Reconciliation Feasibility in the Presence of Gene Duplications, Losses, and Coalescence with Multiple Individuals per Species
- Noelle Noyes, Maggie Weinroth, Enrique Doster, Pablo Rovira Sanz, Xiang Yang, Jaime Ruiz, Christina Boucher, Kenneth Jones, Paul Morley, Keith Belk and Zaid Abdo. A Dirichlet-Multinomial Bayesian Model for Evaluating Antimicrobial Resistance Gene Abundance in Metagenomic Data
- Harry Yang, Serghei Mangul, Farhad Hormozdiari, Alexandra Dainis, Elizabeth Tseng, Euan Ashley, Alex Zelikovsky and Eleazar Eskin. Hercules: Haplotype-aware error correction of long single molecule reads in RNA-Seq
- Han Li and Peter Ralph. Using Local PCA to Investigate Population Structure Along the Genome
- Bahar Behsaz, Hosein Mohimani, Pieter C. Dorrestein and Pavel Pevzner. Automated Peptidic Natural Product Sequencing Using Mass Spectrometry and Marfey’s Analysis
- Abdullah Khamis, Artem V. Artemov, Anna Lioznova, Vladimir B. Bajic and Yulia Medvedeva. Regulatory role of single CpG methylation
- Rasmus Fonseca, Sune G. Enevoldsen and Martin A. Hansen. SeqScan: Scan nucleotide and protein sequences with elaborate user-defined patterns
- Olivera Grujic, Yuju Lee and Jason Ernst. Systematic Prediction of Conserved Non-Exonic Bases from Epigenomic and Transcription Factor Binding Data
- Jasmijn A. Baaijens, Amal Zine El Aabidine, Eric Rivals and Alexander Schoenhuth. De novo assembly of viral quasispecies
- Davide Verzotto, Audrey Teo, Luka Sterbic, Burton Chia, Mile Sikic, Axel Hillmer and Niranjan Nagarajan. Super-scaffolding of large eukaryotic genomes with single molecule maps
- Guillaume Holley and Faraz Hach. BFT-Comp: Alignment-free and reference-free compression of pan-genome sequencing reads
- Mikel Hernaez, Pan Li, Idoia Ochoa, Tsachy Weissman and Olgica Milencovic. Micro: Microbial Database Compression Via Community Detection and Reference Discovery
- Noelle Noyes, Maggie Weinroth, Enrique Doster, Pablo Rovira Sanz, Chris Dean, Xiang Yang, Jaime Ruiz, Kenneth Jones, Christina Boucher, Zaid Abdo, Keith Belk and Paul Morley. A Haplotype Identification System for Antimicrobial Resistance Genes in Shotgun Metagenomic Data
- Chao Wang, Xi Li, Changlong Li, Aili Wang and Xuehai Zhou. MIC++: Accelerating Maximal Information Coefficient Calculation with Clouds, GPUs, and FPGAs
- Shu-Hwa Chen, Sheng-Yao Su, Yi-Hsuan Lu and Chung-Yen Lin. MOLAS: Multi-Omics onLine Analysis System for Gene Expression Profiling
- Jeremie Kim, Damla Senol, Donghyuk Lee, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan and Onur Mutlu. Genome Read In-Memory Mapper (GRIMM): Fast Location Filtering with 3D Stacked Memory Technologies
- Mohammadhossein Moeinzadeh, Jun Yang and Martin Vingron. Haplotype Reconstruction for Sweet Potato (Ipomoea Batatas [L.] Lam) genome
- Mohammad Sadeh. Estimating Causal Effect Strength between Histone Modifications and Modifiers in Chromatin Signaling Networks
- Min Xu and Frank Alber. De novo visual proteomics in single cells through pattern mining
- Sanjana Gupta, Raghavendran Partha and Jocelyn Sunseri. Assessment of Classification Algorithm Performance on Cancer-Derived Gene Expression Data
- Derek Aguiar, Li-Fang Cheng, Fantine Mordelet, Bianca Dumitrascu and Barbara Engelhardt. iDISQ: Isoform discovery and individual-specific quantification from RNA-seq data
- Aziz Mezlini, Tal Friedman, Ekansh Sharma and Anna Goldenberg. Improving power for exome variant aggregation using biologically informed graphical models
- Florian Massip, Misha Sheinman, Sophie Schbath and Peter Arndt. Comparing the Statistical Fate of Paralogous and Orthologous Sequences
- Ascia Eskin, Richard Wang, Hane Lee, Valerie Arbodela, Kevin Squire, Joshua L. Deignan, Negar Khanlou, Perry B. Shieh and Stanley F. Nelson. RNA sequencing improves diagnostic yield in Duchenne Muscular Dystrophy
- Chelsea J.-T. Ju, Ruirui Li, Zhengliang Wu, Zhao Yang and Wei Wang. Fleximer: Accurate Quantification of RNA-Seq via Variable Length k-mers
- Qian Yang, Yue Hu, Jun Li and Xuegong Zhang. UFsQTL: an Ultra-Fast Method of Splicing QTL
- Gleb Kichaev, Huwenbo Shi, Megan Roytman and Bogdan Pasaniuc. Large-scale integrative fine-mapping over 20 complex traits with over 2.2 million phenotypic measurements
- Huwenbo Shi, Gleb Kichaev and Bogdan Pasaniuc. Fine-scale mapping of genomic heritability using summary association statistics
- Megan Roytman and Bogdan Pasaniuc. Methods for fine-mapping with chromatin and expression data
- Jeongkyun Kim and Hyunju Lee. Text-mining approaches for extracting disease-gene-biological events relationships for all diseases
- Mikhail Kolmogorov, Brian Raney, Duncan Odom, Paul Flicek, David Thybert, Benedict Paten and Son Pham. Pseudo-chromosome assembly of large and complex genomes using multiple references
- Alexander Shlemov, Andrey Bzikadze, Sergey Bankevich and Yana Safonova. IgQUAST: A quality assessment tool for adaptive immune repertoires
- Sergey Bankevich, Yana Safonova, Alexander Shlemov and Andrey Bzikadze. IgReC: constructing adaptive immune repertoire from barcoded sequencing reads
- Gryte Satas, Mohammed El-Kebir and Ben Raphael. Estimating the Cancer Cell Fraction of Mutations from Bulk Tumor Sequencing Data
- Rebecca Elyanow, Hsin-Ta Wu and Benjamin J. Raphael. Identifying Structural Variants from 10X Synthetic Long Read Sequencing Data
- Andrey Bzikadze, Yana Safonova, Alexander Shlemov and Sergey Bankevich. AntEvolo: a novel approach for joint recombination and clonal analysis of antibody repertoires
- Hiren Karathia and Sridhar Hannenhalli. Global transcriptional dysregulation in Breast cancer
- Azim Dehghani Amirabad and Marcel H. Schulz. Multitask regression for context-specific prioritization of miRNA targets in transcripts
- Vincent Kyi, Brian Bleakley and Howard Choi. BD2K Centers of Excellence
- Vasilisa Rudneva, Simon Anders, Wolfgang Huber and Jan Korbel. Robust identification of recurrent intergenic somatic mutations in cancer genomes by cross-validation